Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i10f
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia t...    29   3.9  
AF016662-9|AAB66062.2|  102|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical ...    27   8.9  
AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.     27   8.9  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
 Frame = +3

Query: 330 FVRRRRPVPM-NKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSV 506
           +  R RP+   +KL+E   D +SFPSGH+SRA ++  ++ Y  + + ++  P + + + V
Sbjct: 85  YFHRERPIKTYSKLLEHTVDIYSFPSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVV 141

Query: 507 SISRVLAERHYLLDSXXXXXXXXLEGLFMSLI 602
            +SRV   RHY+ D         LE   M  I
Sbjct: 142 GLSRVALGRHYITDVLAGIFIGYLEARLMLTI 173


>AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia
           telangectasia mutated)family protein 1 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 180 IENGSVKTLEQLFLVLCQQMSS*FEHHTAKFFST 79
           ++  S +T  Q+F+ +CQQ S  F H     FST
Sbjct: 430 VQTESTETRRQVFVEICQQYSPVFRHFFYTNFST 463


>AF016662-9|AAB66062.2|  102|Caenorhabditis elegans Hypothetical
           protein C33C12.10 protein.
          Length = 102

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 649 SDNDXRILADVLWDNHMRDMKRPSRIPIPTPPM 551
           SD+D +I+A+ L  + + D + PS +  P PP+
Sbjct: 37  SDSDRQIIAEPLSPSSVFDARGPSLVVEPEPPL 69


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 48   ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 191
            +TE+  Q P    PML  +    +Q+  + +   LK   L S+  H Q++E+
Sbjct: 1664 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1715


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 48   ETEKKRQTP----PMLKKILQYDVQITKTFVDRALKITALKSLRNHSQLLEI 191
            +TE+  Q P    PML  +    +Q+  + +   LK   L S+  H Q++E+
Sbjct: 1673 DTEEDAQLPEKNKPMLTYLRSLVLQLVHSPISSVLKCCLLLSVEQHKQMIEV 1724


>Z70210-1|CAA94149.1|  176|Caenorhabditis elegans Hypothetical
           protein K08H2.1 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 440 NERDEHSPACMSGWE*ELIRTNFHELIH 357
           NE  +H+   ++ W+ + IRTN   L+H
Sbjct: 70  NEDQDHAQRILTAWDVQFIRTNSAILLH 97


>AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +3

Query: 417 RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 536
           R+ L+SFIL+Y D++S I    L  W+ V++++ R LA ++
Sbjct: 99  RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138


>AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +3

Query: 417 RAVLISFILIYFDSVSIIFYPPLMAWV-VSVSISRVLAERH 536
           R+ L+SFIL+Y D++S I    L  W+ V++++ R LA ++
Sbjct: 99  RSYLLSFILLYSDALSKI-SQKLSVWLGVTMAMLRFLAVKY 138


>AF440520-1|AAL34108.1|  172|Caenorhabditis elegans SKR-21 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 440 NERDEHSPACMSGWE*ELIRTNFHELIH 357
           NE  +H+   ++ W+ + IRTN   L+H
Sbjct: 66  NEDQDHAQRILTAWDVQFIRTNSAILLH 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,908
Number of Sequences: 27780
Number of extensions: 332954
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)