Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i09r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    42   9e-05
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    29   0.71 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.2  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   2.2  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   5.0  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 734 VVSLAALGEGWHNYHHVFPWDYRTS-ELGRINVSTNFIDFFAKIGWAYDLKAATSSMIE 561
           + +L  LGEG HNYHH FP DYR        + +  FI   +  G AY+L     + I+
Sbjct: 273 ITALVTLGEGNHNYHHAFPNDYRNGLRWYEYDPTKIFIYIASLFGLAYNLNTFPDNEIQ 331


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 677 WDYRTSELGRINVSTNF-IDFFAKIGW 600
           WD++  EL  I +++NF I F   +GW
Sbjct: 403 WDHKIGELAAIIIASNFGIPFIISLGW 429


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 405 SKLLYFNWLLWIIKFGLQ*WFK 470
           SK+ YFNWL + + F    W+K
Sbjct: 245 SKIFYFNWLGFFVVFWNPYWYK 266


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 728 SLAALGEGWHNYHHVFPWDYRTSELGRINVS 636
           SL   GE W   HH+   DY   E G+ + S
Sbjct: 525 SLLGTGEKWTMLHHINTTDYLNYETGKFSKS 555


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 266 GLTKSKLIIFYKKYDQLLVNN 204
           GLT  KL  + K+YD ++ NN
Sbjct: 100 GLTLFKLYFYNKRYDMVITNN 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,629
Number of Sequences: 5004
Number of extensions: 52197
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)