Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i09r
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.3  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.3  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 490 CCFELVSGSSDSPKVPSP 543
           C   +V G SD+P  P+P
Sbjct: 326 CLVNIVLGDSDTPPKPAP 343


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 355 ISNFAVESIK*VML*YFQNYC 417
           + NF ++S+K     YFQ YC
Sbjct: 2   MDNFTLQSLKKDFGTYFQQYC 22


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 564 NHRRCGRFKIISPSDFSEEINEIRGNIYSSK 656
           NH +  R  I       +++N+ RGN  S K
Sbjct: 489 NHSKSSRINIERMKQVYQQLNKYRGNGVSLK 519


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 472 YLNHHCKPNLII 437
           ++NH C PNL +
Sbjct: 577 FINHSCDPNLAV 588


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +3

Query: 594 ISPSDFSEEINEI 632
           ++P DF+E+++EI
Sbjct: 83  LTPDDFTEDVHEI 95


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +3

Query: 594 ISPSDFSEEINEI 632
           ++P DF+E+++EI
Sbjct: 83  LTPDDFTEDVHEI 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,824
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)