Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i09f
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 64 2e-11
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 29 0.72
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 1.3
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 27 2.9
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 27 2.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 3.8
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 5.1
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 5.1
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 6.7
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 6.7
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 25 8.8
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 8.8
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/66 (45%), Positives = 42/66 (63%)
Frame = +1
Query: 424 IRWPDLVVQVSLHLVSIYGIFLIVTNEVKLLTTLFALATIYTSGFGITAGVHRLWSHRAY 603
+ W ++ L +++IYG+F T ++ T +FA+ SG GITAG HRLWSHRAY
Sbjct: 62 LNWLHCMLIFGLPMIAIYGVF---TTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAY 118
Query: 604 KARTPL 621
KA+ PL
Sbjct: 119 KAKKPL 124
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 28.7 bits (61), Expect = 0.72
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 256 PALELRLTSDGCK-DENNVEHSKN--NNTVKQNNILNEKTNNETDFD 387
P +RLTS + +E VE K+ +NTVK+ L+ TN ET FD
Sbjct: 83 PTPRMRLTSIQHQLEEAAVEGYKSGESNTVKEPKELHTATNTETQFD 129
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 202 ITMAPAQQNIEVCTEVMEPALELRLTSDGCKDENNVEHSKN-NNTVKQNNILNEKTNNET 378
I+ P +I E +L + D+NN+ ++ N NNT K+ N L + +
Sbjct: 698 ISAYPIAMSIRQTNVYEERSLGIYAADTENDDDNNINNNNNDNNTPKRKNFLMDHIQRQL 757
Query: 379 DFDI 390
D+
Sbjct: 758 SHDL 761
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 268 LRLTSDGCKDENNVEHSKNNNTVKQNNI--LNEKTNNETD 381
L L G E+ ++ NN +N+ LN KT N+TD
Sbjct: 91 LGLVDSGSDSEDEIKEKAENNASLKNDEDDLNTKTENKTD 130
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 253 EPALELRLTSDGCKDENNVEHSKNNNTVKQNNILNEKTNNETDFDISKYEAME 411
E LE D K+ N E ++NNT+K+ E NE ++K +E
Sbjct: 60 EERLEKESLLDAIKN-NEYEKQRDNNTIKRLKNELELYQNECQLQLNKVRTLE 111
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 171 DSVRSCIRLNGHFLYEFKC 115
DS + C+ +NGHF+ C
Sbjct: 418 DSAKKCVEMNGHFIAGRPC 436
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 280 SDGCKDENNVEHSKNNNTVKQNNILNEKTNNE-TDFDIS 393
+DGC +EN + + V+ N+ T NE T+ D S
Sbjct: 22 ADGCSEENGYYYCNQASEVEFTNVGYSSTYNEITNMDTS 60
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 401 SYLLMSKSVSLLVFSFNILFCLTVLLFL 318
S LL + + LLV SF LF + LLF+
Sbjct: 439 SKLLRREKIPLLVSSFESLFKMNALLFI 466
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = +1
Query: 244 EVMEPALELRLTSDGCKDENNVEHSKNNNTVKQNNILNEKTNNETDFD 387
++ E L+ L + KDE++ + S+ N ++ + +++ N+T+ +
Sbjct: 50 DLKEEDLQKELQKESIKDESSAKSSETENVLEFATLDSKRNVNDTEVE 97
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 411 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 274
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 411 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 274
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 411 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 274
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 411 LHCFIFAD--VKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRE 274
LH F FA +++C I F + LF ++F H I+ T I++E
Sbjct: 30 LHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFKHTIYRGTLIQKE 77
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 402 FIFADVKVCFVIGFLV*YIILFDCVVIFGVLHIIFVFTSIRRES*FQCRFHYFCANF 232
FI + +KV +GF++ I+ +C + H ++ SI ++ F+ F FC+ F
Sbjct: 216 FILSTIKVIATVGFII-LAIIINCGGV-PTDHRGYIGGSIIKQKPFRHGFKGFCSVF 270
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 274 LTSDGCKDENNVEHSKNNNTVKQNNILNEKTNNETD 381
L SDG E++ + + + + N++NEK + + D
Sbjct: 15 LPSDGLYPEDDDDADMDQDKNPEENVMNEKEDEDVD 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,251
Number of Sequences: 5004
Number of extensions: 52399
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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