Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i09f
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0791 - 5930553-5930802,5931042-5932351                           33   0.18 
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267           29   3.9  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    28   5.2  

>02_01_0791 - 5930553-5930802,5931042-5932351
          Length = 519

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 421 RIRWPDLVVQVSLHLVSIYGIFLIVTNEVKLLTTLFALATIYTSGFGITAG-VHRLWSH 594
           R R PD    V L  V +   +LI      LLT L AL  ++ S   +TAG V  LWSH
Sbjct: 17  RRRLPDFQQSVRLKYVKLGYHYLITNGVYLLLTPLIALVAVHLS--TLTAGDVAGLWSH 73


>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
          Length = 346

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 278 RLMDVKTKIMWSTPKITTQSNKIIY*TRKPITKQTLTSANMKQWSSRHGSGG 433
           RL  + T+  W+ PK+T  S +  Y   +P    TL  A  K    + G GG
Sbjct: 30  RLCPLITRQRWAAPKVTAGSAR-RYVADQPSFSSTLLDAIYKSMDEQPGHGG 80


>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -3

Query: 431  HLIRGVNSIASYLLMSKSVSLLVFSFNILFCLTVLLFLECSTLFSSLHPSDVSLNSNAGS 252
            H +R + S+A Y   + + ++ + S   L CL  L    C  LFSS  P +++    +G+
Sbjct: 1167 HNLRFLTSLAIYGCRNLA-TISIESLRQLVCLKSLELYGCPKLFSSDVPPELTCEYMSGA 1225

Query: 251  ITSVQTSMFC 222
              S   S+ C
Sbjct: 1226 NHSALPSLEC 1235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,978
Number of Sequences: 37544
Number of extensions: 320365
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)