Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i07f
(316 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 30 0.40
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 30 0.40
Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical pr... 26 5.0
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 26 5.0
AF039046-6|AAB94216.1| 66|Caenorhabditis elegans Caenacin (cae... 26 5.0
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 25 8.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 25 8.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 25 8.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 25 8.7
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 25 8.7
U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm recept... 25 8.7
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 25 8.7
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 258 KYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 106
KY+F ++I ++ LLSS + S+++GN + EK S HR
Sbjct: 1242 KYHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 258 KYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 106
KY+F ++I ++ LLSS + S+++GN + EK S HR
Sbjct: 1242 KYHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292
>Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical
protein ZK1251.8 protein.
Length = 568
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 159 GGSPTARSSRRESAKIVAEHSAAEK*FCSQNNTYVYTLVFTV 284
GG P + +E K V + + AEK + + +T++ T+
Sbjct: 136 GGQPRKKIKNKEEEKDVIDETPAEKWSIGNSVIFAFTVITTI 177
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 117 CGGRNISLYLVARKGGSPTARSSRRESAKIVAEHSAAEK*FCSQNNTYV 263
CGG S + +K G P+ SS + + K + AA+ C + + YV
Sbjct: 1373 CGGGKASAIVAEKKSGKPSTFSS-KPNGKEDGDDEAAD--VCDRGSAYV 1418
>AF039046-6|AAB94216.1| 66|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 4 protein.
Length = 66
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 225 LHYVLLLSSPIRALSSVRWGNLPF 154
L Y+L+L I A+SS +WG P+
Sbjct: 2 LRYILVLLVAIIAMSSAQWGYGPY 25
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 68 PCELEFLVIAKWQFICGNE 12
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 68 PCELEFLVIAKWQFICGNE 12
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 68 PCELEFLVIAKWQFICGNE 12
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 68 PCELEFLVIAKWQFICGNE 12
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 68 PCELEFLVIAKWQFICGNE 12
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 68 PCELEFLVIAKWQFICGNE 12
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 68 PCELEFLVIAKWQFICGNE 12
PCEL +V+AK+QF N+
Sbjct: 4205 PCELADVVVAKYQFEVPNQ 4223
>U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm receptor
protein 138 protein.
Length = 328
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 109 MTVVAVGTFLFTWWQEREVPPPHG 180
MT+ + + +FTW + +P HG
Sbjct: 41 MTIFTINSIIFTWVEMMSLPLMHG 64
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 308 LIYNIILLDSKHKRVHVSIILRTKLFFRCTMFCYY 204
++ +L++ + +HV I R K FF+C MF ++
Sbjct: 892 IVPQTVLMEISFRGIHV-IDKRRKNFFQCPMFDFF 925
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,608,262
Number of Sequences: 27780
Number of extensions: 143252
Number of successful extensions: 361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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