Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i04r
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 30 1.7
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 29 3.0
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical p... 28 5.3
Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical p... 28 5.3
Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.0
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 7.0
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 28 7.0
Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical p... 27 9.2
Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical p... 27 9.2
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ... 27 9.2
AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear recep... 27 9.2
AL034488-4|CAA22449.1| 497|Caenorhabditis elegans Hypothetical ... 27 9.2
AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical... 27 9.2
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -2
Query: 619 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 443
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -2
Query: 619 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 443
++ V+++L N K+ C ++ QL IVR+C+ + FA I+ + K G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 388 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 290
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 388 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 290
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 549 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 442
FG APRT SG + Q S++L S+PKT A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -2
Query: 397 AYGDGKDKTSPRVSWKLIALWENNK---VYFKILNTERNQYLVLGVGTNWNGDH 245
++G + PR ++ I+ + + YF++L+ E N+Y+++ N +G H
Sbjct: 129 SWGPNFNSPKPRQVFRDISTYSYERGIRAYFRVLSAEDNKYILIACHANLHGLH 182
>Z46934-11|CAE18043.1| 497|Caenorhabditis elegans Hypothetical
protein ZK1320.12b protein.
Length = 497
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 670 DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 566
D + EK + +KK IT++VN +IRN C+
Sbjct: 207 DFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z46934-10|CAD18882.1| 495|Caenorhabditis elegans Hypothetical
protein ZK1320.12a protein.
Length = 495
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 670 DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 566
D + EK + +KK IT++VN +IRN C+
Sbjct: 207 DFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241
>Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical
protein K01D12.5 protein.
Length = 270
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 5 TLYYNLESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQCQSLA 139
T Y N++++ P M+G++ S VVS G++ + G N+ ++A
Sbjct: 91 TGYSNIQTVGQPYQMYGSAPGSNVVSGGNSESYGYNQQAPVPTVA 135
>Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical
protein T04F3.2 protein.
Length = 260
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 31 LYPKRNVRDFRLLCRCIPRPCGDPRAQPSSTVSKP 135
LY K D + C C+ G+P+ S+T KP
Sbjct: 83 LYDKVQCYDVSIYCWCVDELSGEPKLGSSTTRGKP 117
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 537 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 442
A + SSG+VSQ+SS SS + R +L ++ S
Sbjct: 91 AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 20 LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 127
L+++ S+ G S AV GH T GLN QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 20 LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 127
L+++ S+ G S AV GH T GLN QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645
>Z74034-4|CAE17842.2| 319|Caenorhabditis elegans Hypothetical
protein F43A11.3 protein.
Length = 319
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 571 CMEYAYQLWL---QGSKDIVRDCFPVEFRLIFA 482
C+ Y Y+L + +KD+ RDCF F + FA
Sbjct: 139 CLFYVYRLTIVIYMTAKDVARDCFYSFFPITFA 171
>Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical
protein ZC410.1b protein.
Length = 394
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 346 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 203
IA+WE + V F LN ++ +L T W + N + R Q
Sbjct: 280 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 327
>Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical
protein ZC410.1a protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 346 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 203
IA+WE + V F LN ++ +L T W + N + R Q
Sbjct: 345 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 392
>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
protein C42C1.4a protein.
Length = 1259
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 271 VGTNWNGDHMAFGVNSVDSFRAQWYLQPAK 182
V +W +HM G+ DSF A W + P K
Sbjct: 346 VNIHWMSNHMIVGI---DSFGAVWQIDPEK 372
>AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear receptor
NHR-11 protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 346 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 203
IA+WE + V F LN ++ +L T W + N + R Q
Sbjct: 345 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 392
>AL034488-4|CAA22449.1| 497|Caenorhabditis elegans Hypothetical
protein Y54G11A.4 protein.
Length = 497
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -2
Query: 256 NGDHMA---FGVNSVDSFRAQWYLQPAKYDNDVLFYIYNREYSKALTL 122
NG H F + D +R W L Y + LF+I + EY AL +
Sbjct: 227 NGRHKEGKEFMYKTEDDWRQGWMLAAHNYWHTALFHIESAEYEPALEI 274
>AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical
protein T15B7.14 protein.
Length = 650
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 123 SVKALLYSRL*M*NKTSLSYLAG--CRYHWALKLSTLLTPKAIWSPFQLVPTPNTKYWLR 296
S+ YS+L + K++L Y+A C +W + T T K S F L+ P ++L+
Sbjct: 76 SLTTFEYSKLGIFRKSTLFYIAVAVCYLYWLIY--TFCTFKFSRSQFDLLIAPYRGFYLK 133
Query: 297 SVFKI 311
SV +
Sbjct: 134 SVLML 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,686
Number of Sequences: 27780
Number of extensions: 269765
Number of successful extensions: 867
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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