Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i02r
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    27   3.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   5.2  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    26   5.2  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   5.2  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   9.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.1  

>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = -1

Query: 745 DAIVYGVTIPNTEGKAGMAALADPDHNIDIAALSKGLKTSLPV-YAR--PLFLRILPQTP 575
           D I+    +PN +G +    +   DHN  I A++  +  +  V Y       L + P T 
Sbjct: 413 DLILMDFILPNLDGLSVTCLIRQYDHNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTK 472

Query: 574 LTATFKLKKK--ELMEVAYNVNVCKDP 500
           LT    LKK+   L++   ++N+   P
Sbjct: 473 LTLLQLLKKQLLNLLQADNSINMSDVP 499


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 616 RPAGRSLVLLTMQLCLYCDPGQ 681
           RP    L   T+Q C+Y DPG+
Sbjct: 37  RPCSNCLKRSTIQSCIYIDPGK 58


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = -1

Query: 316 REKIQFRTSESEKIDRASRDPLDFGEREKAS*VFTLIHSIPLYKINLI 173
           +E I+  T ES ++DR S+  L FG  +    VF+L+ S  L+K+ +I
Sbjct: 36  QEAIESLTGESSRVDRNSKLGLSFGVFQS---VFSLLFS-GLHKLWMI 79


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 610 RPLFLRILPQTPLTATFKLKKKELMEVAYNVNVCKDPL 497
           +PL + I      T  FK++KK+  +    +  C +PL
Sbjct: 245 QPLIISISANLKATKKFKIEKKKAQDYGRKLYFCMNPL 282


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  NTHSLITKKKWCACSLVHMKEVKHLL 132
           NTH L+  K     +L  + EVKH+L
Sbjct: 183 NTHELLAMKMMKKSTLQQLNEVKHIL 208


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 200 AVYKSKDLACFLPLSKVKWIARRSVYFLTLARPKLYFFSLTVTNLSRVKFNS 355
           A YK+KD   F   + + W  R+ + F+ LA  + + +S  +     V F +
Sbjct: 205 ANYKAKDGHLFFLRTGILWGFRKPILFIELASIQHFSYSNVLQRTFTVNFEA 256


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 637 LKTSLPVYARPLFLRILPQTPLTATFKLKKKEL 539
           LKT LP YA P  +  L + PL    K+ K  L
Sbjct: 826 LKTKLPSYAIPSVIVPLHKMPLNPNGKIDKPAL 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,488
Number of Sequences: 5004
Number of extensions: 62297
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)