Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i02r
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 32 0.44
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 32 0.58
07_01_0655 - 4910497-4911972,4912035-4912415 31 1.3
10_08_1057 + 22594419-22594466,22594710-22594776,22595053-225952... 29 4.1
06_03_1323 + 29313574-29314109,29314428-29315198,29315277-293153... 29 4.1
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 29 4.1
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76... 29 5.4
10_01_0051 - 741031-741820,742998-743530,743616-743833,743941-74... 29 5.4
04_04_1460 + 33764106-33764303,33764675-33766201 29 5.4
10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78... 28 9.5
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 28 9.5
>01_01_0558 +
4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 478 TSDLRSKGDPCIHLH-YKLLPLALSFLV*TWLLTEFGGGFSERAAERRPAGRSLVLLTMQ 654
TSD +G P + H Y L P F + L E+G +E ERRP GR L L ++
Sbjct: 706 TSDNLPEGIPDVVRHLYFLSPDHAKFFRHKFSLIEYGSLSNESLPERRPPGRPLELNNLR 765
Query: 655 LCLYCD 672
+ D
Sbjct: 766 TIWFMD 771
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 34 LDQ*SFTNTHSLITKKKWCACSLVHMKEVKHLLRYVVLWLSLFIILKSN 180
LD+ + + L +W C++ ++EVK LLR + +WL+ + +N
Sbjct: 354 LDKAAIVSDEDLEDGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYFIAN 402
>07_01_0655 - 4910497-4911972,4912035-4912415
Length = 618
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 76 KKKWCACSLVHMKEVKHLLRYVVLWLSLFI 165
K W CSL ++E K +LR V +WL+ +
Sbjct: 333 KNPWRLCSLQQVEEAKCILRVVPVWLTCIV 362
>10_08_1057 +
22594419-22594466,22594710-22594776,22595053-22595270,
22595425-22595981,22596398-22597217
Length = 569
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 85 WCACSLVHMKEVKHLLRYVVLWLS 156
W CS+ ++EVK LLR + +W++
Sbjct: 322 WLQCSVTQVEEVKILLRMLPIWVT 345
>06_03_1323 +
29313574-29314109,29314428-29315198,29315277-29315328,
29318373-29318909
Length = 631
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 85 WCACSLVHMKEVKHLLRYVVLWLSL 159
W CSL ++E+K L+R + LW S+
Sbjct: 199 WRLCSLTQVEELKILVRMLPLWASI 223
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 763 NLVGLKDAIVYGVTIPNTEGKAGMAALADPDHNI 662
NL G++ A ++ +I +T GK A ++DP H I
Sbjct: 455 NLGGIRGASLFPHSIRSTAGKGRPARMSDPGHTI 488
>10_01_0053 -
767131-767962,768517-769037,769384-769601,769720-769825,
769958-770017
Length = 578
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 82 KWCACSLVHMKEVKHLLRYVVLW--LSLFIILKSNLS 186
+W C++ ++EVK L+R +W L LF + S +S
Sbjct: 332 RWRQCTVTQVEEVKMLVRMCPIWACLVLFFSVSSQMS 368
>10_01_0051 -
741031-741820,742998-743530,743616-743833,743941-744043,
744239-744318,744719-744725
Length = 576
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 46 SFTNTHSLITKKKWCACSLVHMKEVKHLLRYVVLWLSLFI 165
S ++ +S + W C++ ++E+K LLR +W SL +
Sbjct: 323 SDSDDNSPVQPDPWRLCTVSQVEELKMLLRVFPVWASLLV 362
>04_04_1460 + 33764106-33764303,33764675-33766201
Length = 574
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 79 KKWCACSLVHMKEVKHLLRYVVLWLS 156
+ W CS+ ++EVK L++ V +W+S
Sbjct: 305 RPWSLCSVQQVEEVKCLVKIVPVWIS 330
>10_01_0055 -
785172-785997,786859-787394,787478-787695,787789-787891,
788723-788770
Length = 576
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 85 WCACSLVHMKEVKHLLRYVVLWLSLFIILKSN 180
W C++ ++E+K LLR W S I N
Sbjct: 325 WSLCTVTQVEELKMLLRMFPTWASFVIFFAVN 356
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 85 WCACSLVHMKEVKHLLRYVVLWL 153
W C++ ++EVK +LR + +WL
Sbjct: 370 WKLCTVTQVEEVKSILRLLPIWL 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,535,889
Number of Sequences: 37544
Number of extensions: 370342
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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