Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i02r
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical pr... 89 4e-18
Z70684-10|CAA94602.2| 684|Caenorhabditis elegans Hypothetical p... 62 4e-10
U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 31 1.2
U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z68159-4|CAA92285.1| 323|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical p... 29 4.9
Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical p... 29 4.9
Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr... 29 4.9
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein. 29 4.9
>U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical
protein D1009.1a protein.
Length = 655
Score = 88.6 bits (210), Expect = 4e-18
Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Frame = -1
Query: 775 GVISNLVGLKDAIVYGVTIPNTEGKAGMAALADPDH-NID--IAALSKGLKTSLPVYARP 605
G++ ++ ++DA VYGVT+ EG+AGMA + D +++ IA ++ L +L YA P
Sbjct: 530 GILQPVMDVEDATVYGVTVGKMEGRAGMAGIVVKDGTDVEKFIADITSRLTENLASYAIP 589
Query: 604 LFLRILPQTPLTATFKLKKKELMEVAYNVNVCK-DPLYFLDQKLGEYVPLTQKMYEDIVL 428
+F+R+ + T TFKLKK +L + Y++ CK DP+Y+ Y PLT KM +DI
Sbjct: 590 VFIRLCKEVDRTGTFKLKKTDLQKQGYDLVACKGDPIYYWSAAEKSYKPLTDKMQQDIDT 649
Query: 427 G 425
G
Sbjct: 650 G 650
>Z70684-10|CAA94602.2| 684|Caenorhabditis elegans Hypothetical
protein F28D1.9 protein.
Length = 684
Score = 62.1 bits (144), Expect = 4e-10
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Frame = -1
Query: 772 VISNLVGLKDAIVYGVTIPNTEGKAGMAALA-----DPDHNIDIAALSKGLKTSLPVYAR 608
++ + GL DA VYGV +P EG+ GMA++ + D + + L +SL YA
Sbjct: 561 ILHPITGLSDATVYGVEVPQREGRVGMASVVRVVSHEEDETQFVHRVGARLASSLTSYAI 620
Query: 607 PLFLRILPQTPLTATFKLKKKELMEVAYNVNVCKDPLYFLDQKLGEYVPLTQKMYEDIVL 428
P F+RI T TFKL K L + ++ D +Y + + +VP + + L
Sbjct: 621 PQFMRICQDVEKTGTFKLVKTNLQRLGI-MDAPSDSIYIYNSENRNFVPFDNDLRCKVSL 679
Query: 427 GN 422
G+
Sbjct: 680 GS 681
>U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical
protein R57.1c protein.
Length = 751
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 209 YTQHSLIQDKFDLRMINKDNHNTTYRKRCFTSFMCTKLH---AHHFFFVI 69
+TQHS Q+ +D + +N N +RCF + +H A H F +
Sbjct: 647 FTQHSFSQNPYDPKHVNAVNERLKSTERCFINPRGVSMHNPSARHVLFSV 696
>U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical
protein R57.1a protein.
Length = 770
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 209 YTQHSLIQDKFDLRMINKDNHNTTYRKRCFTSFMCTKLH---AHHFFFVI 69
+TQHS Q+ +D + +N N +RCF + +H A H F +
Sbjct: 666 FTQHSFSQNPYDPKHVNAVNERLKSTERCFINPRGVSMHNPSARHVLFSV 715
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 754 GLKDAIVYGVTIPNTEGKAGMAALADPDH--NIDIAALSKGLKTSLPVYARPLFLRILPQ 581
G+K A++YG P T+ A A DPD N+ +A + G+ +L + R +F Q
Sbjct: 376 GIKPAVIYGDLPPGTK-LAQAAKFNDPDDECNVLVATDAIGMGLNLNI-RRVIFNSCTRQ 433
Query: 580 TPLTATF 560
T L T+
Sbjct: 434 TELLPTY 440
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 754 GLKDAIVYGVTIPNTEGKAGMAALADPDH--NIDIAALSKGLKTSLPVYARPLFLRILPQ 581
G+K A++YG P T+ A A DPD N+ +A + G+ +L + R +F Q
Sbjct: 378 GIKPAVIYGDLPPGTK-LAQAAKFNDPDDECNVLVATDAIGMGLNLNI-RRVIFNSCTRQ 435
Query: 580 TPLTATF 560
T L T+
Sbjct: 436 TELLPTY 442
>Z68159-4|CAA92285.1| 323|Caenorhabditis elegans Hypothetical
protein C33D9.4 protein.
Length = 323
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +2
Query: 278 FLTLARPKLYFFSLTVTNLS-----RVKFNSQRA*RSFTSTIGSQMTP 406
FLTL L FF L T+L+ + K +S +A RS T TI + M P
Sbjct: 207 FLTLLCTALMFFKLRATSLNSNISMKTKKSSSKAERSLTITIIAAMIP 254
>Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical
protein F58A3.2c protein.
Length = 1158
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 743 CYCLWRYNTEHRRQ--SWYGGTS*PGSQYRHSCIVKRTKDLP 624
C CLW+YN E +R ++ T S+Y I + K LP
Sbjct: 147 CVCLWKYNKEAKRSDVNYAAVTGEVCSKYASRMINRARKPLP 188
>Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical
protein F58A3.2e protein.
Length = 1051
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 743 CYCLWRYNTEHRRQ--SWYGGTS*PGSQYRHSCIVKRTKDLP 624
C CLW+YN E +R ++ T S+Y I + K LP
Sbjct: 147 CVCLWKYNKEAKRSDVNYAAVTGEVCSKYASRMINRARKPLP 188
>Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical
protein F58A3.2d protein.
Length = 1096
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 743 CYCLWRYNTEHRRQ--SWYGGTS*PGSQYRHSCIVKRTKDLP 624
C CLW+YN E +R ++ T S+Y I + K LP
Sbjct: 147 CVCLWKYNKEAKRSDVNYAAVTGEVCSKYASRMINRARKPLP 188
>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical
protein F58A3.2a protein.
Length = 1040
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 743 CYCLWRYNTEHRRQ--SWYGGTS*PGSQYRHSCIVKRTKDLP 624
C CLW+YN E +R ++ T S+Y I + K LP
Sbjct: 147 CVCLWKYNKEAKRSDVNYAAVTGEVCSKYASRMINRARKPLP 188
>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
Length = 1040
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 743 CYCLWRYNTEHRRQ--SWYGGTS*PGSQYRHSCIVKRTKDLP 624
C CLW+YN E +R ++ T S+Y I + K LP
Sbjct: 147 CVCLWKYNKEAKRSDVNYAAVTGEVCSKYASRMINRARKPLP 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,244
Number of Sequences: 27780
Number of extensions: 341663
Number of successful extensions: 755
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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