Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i02f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.1  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.8  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   4.9  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   4.9  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   6.5  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   8.6  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 506  LTFRQGEDFSNRIAWYFKRQGFKSGEVIALFME 604
            LT+ +  + +N++A   K  GF+ G +IA++ +
Sbjct: 2752 LTYSELNERANKLAHNLKSYGFRVGSIIAVYFD 2784


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -3

Query: 191 RPLQIEPLSSLTSWYLRFYLIWCISFTPEF 102
           +PL ++ +++  SW+L  +++W +  T  F
Sbjct: 125 KPLTVDNVTAFFSWWLVSHIVWIVVGTTTF 154


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 329 WIYLWKKTHKRDFLGLRVLLATMFRIWRWEKQGQSVVSRWAEIAKL 466
           +I +++K H  D   L +L + + + WR+ + G     RW ++A +
Sbjct: 442 YISIYQKNHVHDSPALDLLQSLITKAWRYAELG-----RWLDVATI 482


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 395 LSLTVPLDLENPSCASSSKGKSIGIYHRSIDKLPASQQRSSWSES 261
           L L   + L+N   A    G+      RS+ + PA  +RSS S S
Sbjct: 719 LELLQEVLLQNEEAADLDDGEDTSFGSRSLSRAPAKAKRSSGSLS 763


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 509 TFRQGEDFSNRIAWYFKRQGFKSGEVIALF 598
           T+RQ ++ SN +A +  + G + G+V+ ++
Sbjct: 314 TYRQIDESSNILAHHLVKNGIERGDVVMVY 343


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
 Frame = +1

Query: 217 VHSADNSWTGMASTRLSDHDERCCDAGSLSIDR**IPMDLPLEEDAQEGFS----RSKGT 384
           +HS +    G  S  L D+DE+    G  S D   I  D   +E+ ++ F+     +  +
Sbjct: 30  LHSYEEESAGFDSEELEDNDEQGYSFGVNSEDDEEIDSDEAFDEEDEKRFADWSFNASKS 89

Query: 385 VSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQGSHL 513
              N     L  T+ +S  +   + ++V+  +    G  GS +
Sbjct: 90  GKSNKDHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVGSSI 132


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 586 YLTAFEALTFEVPGYAVTKVF-SLTKGESPVPHDK 485
           YL AFE+    V  Y +T +F  +     P+P  K
Sbjct: 471 YLLAFESKNERVINYVLTNIFEDMVSQSPPIPASK 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,129
Number of Sequences: 5004
Number of extensions: 53095
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)