Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12i02f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0639 + 23055223-23055678,23055788-23056627 35 0.057
04_04_0559 - 26234106-26235169,26235437-26235452 32 0.41
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879... 31 0.94
04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482... 29 3.8
03_05_1069 + 30118930-30120120 29 3.8
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 28 5.0
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 28 6.6
02_04_0402 + 22618998-22619043,22619206-22619345,22620067-226201... 28 6.6
04_04_1583 - 34599638-34600411,34600492-34600812 27 8.7
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 27 8.7
>06_03_0639 + 23055223-23055678,23055788-23056627
Length = 431
Score = 34.7 bits (76), Expect = 0.057
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = -2
Query: 297 PSVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDI----LVLEILFD 130
P A + VGE R +PA+ A IP SA+ P+ +++ L ++I D
Sbjct: 175 PGAAQFMTAVGEIARGRAAPALAPAWGRDAIPCPPSAAVGPLPVPTELRLQYLAMDISTD 234
Query: 129 LVHIFYTRIL-*TNKQCASFNVTIA 58
+ F R L T +C++F V IA
Sbjct: 235 YIDHFKARFLEQTGHRCSAFEVLIA 259
>04_04_0559 - 26234106-26235169,26235437-26235452
Length = 359
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 140 ISSTRMSEKRGVRFEEAERCKGIILTSIALTTAGLGWLLRGSPTMMSAVA 289
+SS ++ +K G E+ R GI+ + L+T L WL+ S T S A
Sbjct: 10 VSSNQLDDKDGREEEQVVRGLGILPAQLELSTKELPWLVGDSATQRSRFA 59
>03_02_0482 +
8798931-8799024,8799118-8799253,8799435-8799506,
8799583-8799654,8799798-8799869,8800133-8800204,
8800530-8800627,8800892-8801062,8801141-8801473,
8802494-8802739,8802884-8803017,8803132-8803344
Length = 570
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 MMSAVATLGAYLLTGDRYQW-IYLWKKTHKRDFLGLRVLL 388
++SAVAT+GA LL W +L+K K+D G RV L
Sbjct: 221 VISAVATVGALLLVALMCFWGCFLYKNFGKKDIHGFRVEL 260
>04_03_0972 +
21347212-21347284,21347966-21348009,21348153-21348237,
21348810-21349358,21350291-21350416,21350772-21350936,
21351243-21351310,21351529-21351618,21351740-21351830,
21352214-21352812
Length = 629
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 448 GGNSEAVSGKEGFYHGG 498
GG + AV+G+EG+Y+GG
Sbjct: 553 GGLARAVAGEEGYYYGG 569
>03_05_1069 + 30118930-30120120
Length = 396
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 245 GWLLRGSPTMMSAVATLGAYLLTGDRYQWIYLWKK 349
G +LRG + +A G+ LL+G IY+W++
Sbjct: 259 GGVLRGHKKAVFCLAAAGSLLLSGSADNTIYVWRR 293
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 449 AEIAKLYPEKKAFIMGDRALTFRQGEDFSNRIAWYFKRQGF 571
+ + +YPE K + +R + +R G+ F ++ KR+G+
Sbjct: 181 SRVVGIYPEIKNPVFVNRQVRWRDGKKFEDKFVAALKRRGY 221
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +1
Query: 343 EEDAQEGFSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQGSHLSS 519
+EDA F+R TV + D+ L + R ++ G V G GG GS L S
Sbjct: 96 KEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVG---GGTGSGLGS 151
>02_04_0402 +
22618998-22619043,22619206-22619345,22620067-22620149,
22620234-22620438,22620524-22620592,22621099-22621188
Length = 210
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 346 EDAQEGFSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQGSHLSSG 522
++ +E F ++ GT+ +QD + G+KVG AV G GG GS G
Sbjct: 154 QNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVG---YAVPNASG---GGAGSSSQGG 206
>04_04_1583 - 34599638-34600411,34600492-34600812
Length = 364
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -2
Query: 411 RHILNIVANSTLRPRKSLLCVFFQR*IHWYLSPVNR*APS----VATALIMVGEPRRSHP 244
R LN++ +S KSL C+ + +P NR P A A I +
Sbjct: 5 RRFLNLIMDSRFPESKSLRCIDLTLHNFFNATPPNRNGPESKVVAADACIQKQNNNKEEA 64
Query: 243 SPAVVSAMD 217
+ A VS+MD
Sbjct: 65 ATATVSSMD 73
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 343 EEDAQEGFSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQGSHLSS 519
+EDA F+R TV V D+ L + R ++ G V G GG GS L S
Sbjct: 156 KEDAANNFARGHYTVGREVVDLCLDRLRKLADNCTGLQGFLVFNAVG---GGTGSGLGS 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,803
Number of Sequences: 37544
Number of extensions: 365555
Number of successful extensions: 1178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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