Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i02f
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    49   2e-06
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AF101315-2|AAC69228.1|  990|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z68342-2|CAA92772.2|  424|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
 Frame = +2

Query: 272 MMSAVATLGAYLLTGDRYQWIYLWKKTHKRDFLGLRVLLATMFRIWRWEKQGQSVVSRWA 451
           +++ V  L   ++ GD   +IY    T  RD  GL +++     +W    Q + +   + 
Sbjct: 60  ILAGVLILYITVVHGD---FIYRSYLTLNRDLTGLALIIEVKIDLWWRLHQNKGIHELFL 116

Query: 452 EIAKLYPEKKAFI--MGDRALTFRQGEDFSNRIAWYFKRQGFKSGEVIALFME 604
           +I K  P K A I    +   T+ +     NR A YF+  G++SG+V+AL+ME
Sbjct: 117 DIVKKNPNKPAMIDIETNTTETYAEFNAHCNRYANYFQGLGYRSGDVVALYME 169


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
 Frame = +2

Query: 350 THKRDFLGLRVLLATMFRIWRWEKQGQSVVSRWAEIAKLYPEKKAFIM--GDRALTFRQG 523
           T  RDF GL++L++    I    K+ + +   +    K +P K A I     R LT+++ 
Sbjct: 54  TLPRDFAGLKLLISVKSTIRGLFKKDRPIHEIFLNQVKQHPNKVAIIEIESGRQLTYQEL 113

Query: 524 EDFSNRIAWYFKRQGFKSGEVIALFME 604
              +N+ A  +  +G+K G+V+ALFME
Sbjct: 114 NALANQYANLYVSEGYKMGDVVALFME 140


>AF101315-2|AAC69228.1|  990|Caenorhabditis elegans Hypothetical
           protein T22H9.3 protein.
          Length = 990

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 482 AFIMGDRALTFRQGEDFSNRIAWYFKRQG 568
           A ++ DRA+  RQ E+F +R++ Y +  G
Sbjct: 545 AIVVFDRAIDMRQAENFCDRLSCYCRENG 573


>Z68342-2|CAA92772.2|  424|Caenorhabditis elegans Hypothetical
           protein F38E11.3 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 444 LDTTDWPCFSQRHILNIVANSTLRPRKSLLC 352
           L+   W CFSQ+ + N  +   L P K LLC
Sbjct: 325 LEEMRWACFSQQMLNNSRSVCGLSPEKLLLC 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,814
Number of Sequences: 27780
Number of extensions: 289201
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)