Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12i02f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 399 SGYGVGKNKASQW 437
           SGYG+G  K S W
Sbjct: 763 SGYGIGLQKGSLW 775


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 347 KTHKRDFLGLRVLLATMFRIWR 412
           K +  +F G+RV+     R+WR
Sbjct: 68  KWNASEFAGIRVIRVPYNRVWR 89


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 149 TRMSEKRGVRFEEAERCKGII 211
           T M  K G+RFEE     GI+
Sbjct: 51  TFMCHKYGLRFEEVSEKYGIL 71


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 317 DRYQWIYLWKK 349
           D++ W+Y WK+
Sbjct: 625 DQWNWVYEWKE 635


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 156 ILVLEILFDLVHIFYT 109
           IL L +LF+ +HI Y+
Sbjct: 6   ILTLGVLFNTLHIIYS 21


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 513 KVRALSPMIKAFFSGYSFAISAHLDTTDWPCFSQ 412
           K R LS  +  +FS +++      + ++WP +S+
Sbjct: 517 KERDLSLRMILYFSEFAYLGKPTKEDSEWPSYSR 550


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -2

Query: 294 SVATALIMVGEPRRSHPSPAVVSAMDVRIIPLHRSASSNRTPLFSDILVLEILFDLVHIF 115
           ++A  + M   PRR  P  A    +      LHR+A  + + L    L+  +  D+ +  
Sbjct: 100 TIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHHDIENAH 159

Query: 114 YTRIL*TNK 88
             R L  N+
Sbjct: 160 IRRTLHMNR 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,547
Number of Sequences: 438
Number of extensions: 3596
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)