Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h24r
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0910 - 22522465-22522473,22522565-22522651,22522707-225227... 32 0.48
03_05_1059 - 30020877-30021539,30022367-30022375 31 0.84
02_04_0103 - 19768288-19768737 31 1.1
01_07_0105 - 41104655-41104851,41105818-41107150 28 5.9
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 7.8
06_01_0137 - 1045301-1047601 28 7.8
06_01_0124 - 958935-959967,959985-961222 28 7.8
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 28 7.8
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 28 7.8
>08_02_0910 -
22522465-22522473,22522565-22522651,22522707-22522768,
22523170-22523697,22524954-22525047
Length = 259
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -1
Query: 391 LSYLSQWKHDKQNWKFMKVKQLWLLKNKFSTNLVPDE 281
++Y+S + H +KF+K K L L++ + + N++P+E
Sbjct: 209 MNYISGFYHKTHIYKFVKKKNLPLIERELTENVIPNE 245
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 31.1 bits (67), Expect = 0.84
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 14 INGFIQKIN-LFFKTLY*ISSSLICNFIRFVSLFC--CILFTVFFIYFLCITLTMFFCPF 184
+N +Q+++ LF L +SLIC+ I F SLFC I++ +F IY I F F
Sbjct: 108 VNLDVQRLHSLFDVALQNNLASLICHCILFRSLFCFRLIIWLMFIIYICYICSHGFTLTF 167
Query: 185 I 187
I
Sbjct: 168 I 168
>02_04_0103 - 19768288-19768737
Length = 149
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 558 PMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 454
PM++K R KRKRK K+ KK K + K+++K
Sbjct: 99 PMREKRRRKRKRKRKKKKKKKKKKKKKKKKKKKKK 133
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 562 DSDAEETPRXXXXXKPVITET-TDKKGKKSIRQTKRENYLKRQAQAAELSKNQLKSQ 395
D D + + K +T T TD+KG++ + + K+++ ++QA AA + + + Q
Sbjct: 442 DDDGQSDGKQTIELKEAMTATKTDEKGEEQVAKDKKDDEQEQQATAAPIESPKQEQQ 498
>08_01_0519 -
4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = -1
Query: 478 SIRQTKRENYLKRQAQAAELSKNQLKSQCLSYLSQWKHDKQNWKFMKVKQLWLLKNKF 305
++ + + E+ + R+A+ E++ + + L +S K K +W+F+ + W + N+F
Sbjct: 530 TVAKKEHEDTILRRARLIEVNIKKAGERSLCNISLEKKPKSHWEFVLEEMAW-MANEF 586
>06_01_0137 - 1045301-1047601
Length = 766
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -1
Query: 376 QWKHDKQNWK-FMKVKQ---LWL--LKNKFSTNLVPDESWQTLIEYFESAKGNVRTL 224
QW ++ + + +++VKQ LW L K VP+E+ Q+++EY + G V L
Sbjct: 488 QWVTNRMSRRNYLRVKQYSVLWFCRLPLKLPAAAVPEEAKQSIVEYLAAYDGAVAPL 544
>06_01_0124 - 958935-959967,959985-961222
Length = 756
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = -1
Query: 376 QWKHDKQNWK-FMKVKQ---LWL--LKNKFSTNLVPDESWQTLIEYFESAKGNVRTL 224
QW ++ + + +++VKQ LW L K VP+E+ Q+++EY + G V L
Sbjct: 478 QWVTNRMSRRNYLRVKQYSVLWFCRLPLKLPAAAVPEEAKQSIVEYLAAYDGAVAPL 534
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/44 (25%), Positives = 27/44 (61%)
Frame = -1
Query: 439 QAQAAELSKNQLKSQCLSYLSQWKHDKQNWKFMKVKQLWLLKNK 308
Q +L+ + L +Q + L ++K D+++W+ + ++LW ++ K
Sbjct: 408 QELVKKLAGSPLAAQTVGNLLKFKLDEKHWETVNGRKLWQIEQK 451
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 110 FCCILFTVFFIYFLCITLTMFFCPFIHLF 196
F +L T+F + + T FF PF+HLF
Sbjct: 1714 FSSLLSTLFCLPVQFLMSTEFFIPFVHLF 1742
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,018
Number of Sequences: 37544
Number of extensions: 229805
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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