Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h24r
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 35 0.061
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 35 0.061
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 35 0.061
Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 32 0.32
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 32 0.43
AC006677-3|AAF39952.2| 298|Caenorhabditis elegans Serpentine re... 31 0.99
Z49071-6|CAA88876.2| 292|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81132-11|CAB03426.2| 302|Caenorhabditis elegans Hypothetical p... 29 2.3
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical pr... 29 3.0
U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical pr... 29 3.0
U13876-1|AAM48538.1| 353|Caenorhabditis elegans Hypothetical pr... 29 3.0
U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical pr... 29 4.0
U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein. 29 4.0
U39678-8|AAK39208.2| 228|Caenorhabditis elegans Hypothetical pr... 28 5.3
U23517-1|AAB93336.1| 245|Caenorhabditis elegans Hypothetical pr... 28 5.3
U23171-5|AAC46705.2| 158|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical... 28 5.3
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 5.3
Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 28 6.9
U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical pr... 28 6.9
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 28 6.9
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 28 6.9
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 28 6.9
AF038608-11|AAC25815.1| 319|Caenorhabditis elegans Serpentine r... 28 6.9
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 27 9.2
AF068709-17|AAC19257.2| 287|Caenorhabditis elegans Serpentine r... 27 9.2
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 34.7 bits (76), Expect = 0.061
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Frame = -2
Query: 630 QKETRRTMKLNRN--LRQLSD--NTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 463
+K+ R +L+ N L ++D + L P + K +K+K+K K +K+ + Q
Sbjct: 8546 KKDESRPDRLDDNCVLTDVTDGLSILSPPPKAKKHLKKKKKHHKKEKIAVKETE-----Q 8600
Query: 462 REKTILNVKPKLQNFQKINSNLSVSAIFL-----SGNMTNKTGSS*KLNSYGY 319
EKT+ ++KP++ ++ SN S IF+ +G + T + LN Y Y
Sbjct: 8601 DEKTVSHLKPEISGMERKRSNSGSSDIFVDVDIEAGEESIHTDALVDLNFYDY 8653
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 34.7 bits (76), Expect = 0.061
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Frame = -2
Query: 630 QKETRRTMKLNRN--LRQLSD--NTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 463
+K+ R +L+ N L ++D + L P + K +K+K+K K +K+ + Q
Sbjct: 8566 KKDESRPDRLDDNCVLTDVTDGLSILSPPPKAKKHLKKKKKHHKKEKIAVKETE-----Q 8620
Query: 462 REKTILNVKPKLQNFQKINSNLSVSAIFL-----SGNMTNKTGSS*KLNSYGY 319
EKT+ ++KP++ ++ SN S IF+ +G + T + LN Y Y
Sbjct: 8621 DEKTVSHLKPEISGMERKRSNSGSSDIFVDVDIEAGEESIHTDALVDLNFYDY 8673
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 34.7 bits (76), Expect = 0.061
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Frame = -2
Query: 630 QKETRRTMKLNRN--LRQLSD--NTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 463
+K+ R +L+ N L ++D + L P + K +K+K+K K +K+ + Q
Sbjct: 8566 KKDESRPDRLDDNCVLTDVTDGLSILSPPPKAKKHLKKKKKHHKKEKIAVKETE-----Q 8620
Query: 462 REKTILNVKPKLQNFQKINSNLSVSAIFL-----SGNMTNKTGSS*KLNSYGY 319
EKT+ ++KP++ ++ SN S IF+ +G + T + LN Y Y
Sbjct: 8621 DEKTVSHLKPEISGMERKRSNSGSSDIFVDVDIEAGEESIHTDALVDLNFYDY 8673
>Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 20 GFIQKINLFFKTLY*ISSSLICNFIRFVSLFC-CILFT--VFFIYFLCITLTMFFCPFIH 190
GF + + TL+ + ICN + V FC +LFT + F+ + I +T FC +I+
Sbjct: 19 GFTGNLLMVLVTLHSKNLRSICNMLICVCCFCDLLLFTDIIAFVVSMFIPITQEFCFYIN 78
Query: 191 LFNDF 205
+ DF
Sbjct: 79 IPADF 83
>Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 20 GFIQKINLFFKTLY*ISSSLICNFIRFVSLFC-CILFT--VFFIYFLCITLTMFFCPFIH 190
GF + + TL+ + ICN + V FC +LFT + F+ + I +T FC +I+
Sbjct: 19 GFTGNLLMVLVTLHSKNLRSICNMLICVCCFCDLLLFTDIIAFVVSMFIPITQEFCFYIN 78
Query: 191 LFNDF 205
+ DF
Sbjct: 79 IPADF 83
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 32.3 bits (70), Expect = 0.32
Identities = 28/72 (38%), Positives = 35/72 (48%)
Frame = +1
Query: 457 LSLFVVSTFYLFYQLXXXXXXXXXXXXXXXLLHRSHQRVVA*LPQVSIQFHRPPRFLLLP 636
LSLF+V T Y FY + LH Q VVA L S+QF PP LLL
Sbjct: 3 LSLFIVKTVYTFYWVVLEKVQ----------LHSFKQYVVA-LRFESVQFKNPP-ILLLL 50
Query: 637 VCDRLVLRKILI 672
+ +R+ L+ I I
Sbjct: 51 IYNRIFLQSITI 62
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = -2
Query: 633 KQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 454
K+ + T ++ +LR++S + H + K SP +PK+ K S ++ +K
Sbjct: 352 KKTASEGTSRIEDDLRRMSSTKEHHHKEHIHHAESK-DSPNMPKRYAKLKSSESSRESQK 410
Query: 453 TILNVKPKLQNFQKINS 403
T + +P L+ + ++S
Sbjct: 411 TSVTRRPSLKKNRSVDS 427
>AC006677-3|AAF39952.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein28 protein.
Length = 298
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = +2
Query: 50 KTLY*ISSSLICNFIRFVSLFCCILFTVFFIYFLCITLTMFFCPFIHLFNDFFCI 214
+T+Y IS+ + +F+ ++ C + +++ + + T+F+ FI +F+ FCI
Sbjct: 84 QTVYIISN--LSHFLNALNRCCALFMPLWYTHIFSNSKTVFYRNFIWIFSIIFCI 136
>Z49071-6|CAA88876.2| 292|Caenorhabditis elegans Hypothetical
protein T22C8.4 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 586 AVKRQHVDDSDAEETPRXXXXXKPVITETTDKKGKKSIRQTKRENYLKRQAQAAELSKNQ 407
A KR+ +D S + + + +K+ K+ R KRE LK++++ A KN+
Sbjct: 86 APKRRRIDKSSTSSEAKIQRMED-AMKKKLEKEQKEKARLKKREETLKKKSETAAAKKNK 144
Query: 406 L 404
+
Sbjct: 145 I 145
>Z81132-11|CAB03426.2| 302|Caenorhabditis elegans Hypothetical
protein T26E4.15 protein.
Length = 302
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 14 INGFIQKINLFFKTLY*ISSSLICNFIRFVSLFC-CILFT--VFFIYFLCITLTMFFCPF 184
I GF + + TL+ ICN + V FC +LFT + F+ + LT C +
Sbjct: 17 IVGFTGNLFMVLVTLHSNKLRSICNILICVCCFCDLLLFTDVIAFVVSMLTPLTQELCFY 76
Query: 185 IHLFNDF 205
I + DF
Sbjct: 77 ISIPADF 83
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = -2
Query: 633 KQKETRRTMKLNR-NLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRY--DKQ 463
K+KE T+K+ + + + + + +K+ R KR+ + ++ K+L KK++ RY K+
Sbjct: 680 KRKEIVLTLKVRKASTAKKTKKAMQEKKRKRLRAKRRLRRFIMRKRLKKKLRKRYRGAKR 739
Query: 462 REK 454
R K
Sbjct: 740 RRK 742
>Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical
protein M01B2.7 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +2
Query: 14 INGFIQKINLFFKTLY*ISSSLICNFIRFVSLFC-CILFT--VFFIYFLCITLTMFFCPF 184
I GF + + TL+ ICN + V FC +LFT + F+ + T FC +
Sbjct: 17 IVGFTGNLLMVLVTLHSNKLRSICNILICVCCFCDLLLFTDVIAFVVSMFTPSTQEFCFY 76
Query: 185 IHLFNDF 205
I + DF
Sbjct: 77 ISIPADF 83
>Z81039-8|CAB02779.2| 225|Caenorhabditis elegans Hypothetical
protein C25D7.10 protein.
Length = 225
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 104 SLFCCILFTVF-FIYFLCITLTMFFCPFIHLFNDFF 208
S+F IL ++F F YF +TL+ +IH N FF
Sbjct: 168 SIFLQILLSIFVFPYFEVVTLSTIISFYIHFNNAFF 203
>U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical
protein F57B9.7b protein.
Length = 373
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/85 (20%), Positives = 41/85 (48%)
Frame = -2
Query: 618 RRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNV 439
++ + N+ +R+ + T ++H + + ++P Q + V +K K + +
Sbjct: 232 QKLVDTNKKMRKDYEELEQTIYTQRHARNARDSANVIPNQGVDDV----NKDAAKQLAEM 287
Query: 438 KPKLQNFQKINSNLSVSAIFLSGNM 364
K K+Q+ ++ N+N + I + G M
Sbjct: 288 KLKMQDLERENTNQQGNVIRMEGQM 312
>U13876-1|AAM48538.1| 353|Caenorhabditis elegans Hypothetical
protein F57B9.7a protein.
Length = 353
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/85 (20%), Positives = 41/85 (48%)
Frame = -2
Query: 618 RRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNV 439
++ + N+ +R+ + T ++H + + ++P Q + V +K K + +
Sbjct: 212 QKLVDTNKKMRKDYEELEQTIYTQRHARNARDSANVIPNQGVDDV----NKDAAKQLAEM 267
Query: 438 KPKLQNFQKINSNLSVSAIFLSGNM 364
K K+Q+ ++ N+N + I + G M
Sbjct: 268 KLKMQDLERENTNQQGNVIRMEGQM 292
>U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical
protein T13A10.1 protein.
Length = 155
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 558 PMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPKLQN 421
P ++K ++K + K P PK+ K +++E T VKPK Q+
Sbjct: 70 PKKEKSKMKSEVKEPDAPKKENDKTSEDKKEKQEDTFDAVKPKQQD 115
>U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein.
Length = 276
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 65 ISSSLICNFIRFVSLFCCILFTVFFIYFLCITLTMFFCPFIHLFNDFF 208
++S+ +C F +F ++ C+LF FF+ + +F F +L N FF
Sbjct: 223 LNSAFLCLFYKFSNIPNCVLFLHFFLNCNFTCKSKYF-SFSNLANFFF 269
>U39678-8|AAK39208.2| 228|Caenorhabditis elegans Hypothetical
protein C39D10.6 protein.
Length = 228
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 122 LFTVFFIYFLCI--TLTMFFCPFIHLFNDF 205
LFTV FI FLC+ + +F I+ F++F
Sbjct: 159 LFTVLFILFLCLGGLIQAYFAEVIYSFHNF 188
>U23517-1|AAB93336.1| 245|Caenorhabditis elegans Hypothetical
protein D1022.3 protein.
Length = 245
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 548 FCIGVINVLSLNCRRFRFNFIVLLVSF 628
FCIG + SL+C R+RF+ I ++SF
Sbjct: 123 FCIG--GLCSLDCARYRFDGIRAVISF 147
>U23171-5|AAC46705.2| 158|Caenorhabditis elegans Hypothetical
protein K02A2.1 protein.
Length = 158
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 548 FCIGVINVLSLNCRRFRFNFIVLLVSF 628
FCIG + SL+C R+RF+ I ++SF
Sbjct: 36 FCIG--GLCSLDCARYRFDGIRAVISF 60
>AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical
protein F36H12.5 protein.
Length = 197
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 558 PMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPKLQN 421
P ++K ++K + K P PK+ K + +KQ E T VKPK Q+
Sbjct: 70 PKKEKSKMKSEVKEPDAPKKDDKTSDEKKEKQ-EDTFDAVKPKQQD 114
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -2
Query: 633 KQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 454
++KE +R M+ RN+ + +T + K+K+K K K K + +K++ K
Sbjct: 258 RRKEKKREMRAVRNVSEDDSSTSSESEESDFEQKKKKKVKKSKKSKKDKKKEKKEKKKSK 317
>Z81533-4|CAB04338.1| 280|Caenorhabditis elegans Hypothetical
protein F36G9.7 protein.
Length = 280
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 131 VFFIYFLCITLTMFFCPFIHLFNDFFCIFKQ*C 229
++ IYF + L ++FC HLF+ F + C
Sbjct: 182 LYSIYFGFLALFVYFCKIHHLFSSIFNLIVNFC 214
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 519 SPLLPKQLIKKVKS-RYDKQREKTILNVKPKLQNFQKINSNL 397
SP+LP+Q+ K+KS D+ +E N Q F K+NS+L
Sbjct: 142 SPVLPEQISAKIKSDLLDQLKEAACSNA---TQFFSKLNSHL 180
>U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical
protein C01F4.2b protein.
Length = 622
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -1
Query: 382 LSQWKHDKQNWKFMKVKQLWLLKNKF------STNLVPDESWQTL 266
LS + WK+ K LW LK K+ ST+ D +W++L
Sbjct: 255 LSASSSHSEGWKYSSQKLLWKLKPKYAYSHASSTSSSTDSAWKSL 299
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -1
Query: 382 LSQWKHDKQNWKFMKVKQLWLLKNKF------STNLVPDESWQTL 266
LS + WK+ K LW LK K+ ST+ D +W++L
Sbjct: 255 LSASSSHSEGWKYSSQKLLWKLKPKYAYSHASSTSSSTDSAWKSL 299
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 555 MQKKHRVKRKRKSPLLPKQLIKK-VKSRYDKQREK 454
+ KK K K +SP+ PK++ K VK++ DK+ +K
Sbjct: 3 VHKKTEKKTKTESPVKPKKVASKHVKNKKDKKDKK 37
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
defective protein 45 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/72 (22%), Positives = 42/72 (58%)
Frame = -2
Query: 633 KQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 454
+Q E ++ +K ++ L ++ N + + K+ +++ R P+Q++++ + R DK+R +
Sbjct: 638 EQDEIQKKIKQDQ-LYKMQQNAIYQEIIKEKGLEQFRDMD--PEQVLREQRERLDKERAE 694
Query: 453 TILNVKPKLQNF 418
T ++ + +NF
Sbjct: 695 TQRRLQQQEKNF 706
>AF038608-11|AAC25815.1| 319|Caenorhabditis elegans Serpentine
receptor, class z protein79 protein.
Length = 319
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 536 TRCFFCIGVINVLSLNC----RRFRFNFIVLLVSFCFLFAI 646
T C F I + + + C RRF F F V++V+ C +F +
Sbjct: 72 TYCMFGILIFCNIMILCNNPGRRFFFGFFVIVVAMCIVFTL 112
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -2
Query: 639 NRKQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQR 460
N ++KE + K + + T + K+ K+K K + KK K+ DK++
Sbjct: 105 NDEKKEKSKDDKKEESKEDKKEKTKTEDNEGKNEEKKKEKKEEKKDEKEKKEKTEDDKEK 164
Query: 459 EK 454
EK
Sbjct: 165 EK 166
>AF068709-17|AAC19257.2| 287|Caenorhabditis elegans Serpentine
receptor, class x protein24 protein.
Length = 287
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 59 Y*ISSSLICNFIRFVSLFCCILFTVFFIYFLCITLTMFFCPFI 187
Y +S +F+ ++ FC + +++ C+T T F+ F+
Sbjct: 85 YFYENSNFSHFLVSLNRFCAMYLPLYYAPIFCVTKTKFYLTFL 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,687
Number of Sequences: 27780
Number of extensions: 250145
Number of successful extensions: 1439
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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