Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h24f
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0103 - 19768288-19768737                                         31   0.95 
06_03_0904 + 25832026-25832643                                         28   5.1  
01_07_0105 - 41104655-41104851,41105818-41107150                       28   5.1  
02_02_0524 + 11179224-11179469,11179543-11181465                       27   8.9  

>02_04_0103 - 19768288-19768737
          Length = 149

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 362 PMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 466
           PM++K R KRKRK     K+  KK K +  K+++K
Sbjct: 99  PMREKRRRKRKRKRKKKKKKKKKKKKKKKKKKKKK 133


>06_03_0904 + 25832026-25832643
          Length = 205

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +2

Query: 380 RVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPKLQNFQKINSNLSVSAIFLSGTMT 559
           R+  + K  ++ K +   VKS         +  +   + NF++   N+ V A F+ G M 
Sbjct: 81  RLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMA 140

Query: 560 NKTGSS 577
             T  S
Sbjct: 141 GSTSLS 146


>01_07_0105 - 41104655-41104851,41105818-41107150
          Length = 509

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 358 DSDAEETPRXXXXXXPVITET-TDKKGKKSIRQTKRENYLKRQAQAAELSKNQLKSQ 525
           D D +   +        +T T TD+KG++ + + K+++  ++QA AA +   + + Q
Sbjct: 442 DDDGQSDGKQTIELKEAMTATKTDEKGEEQVAKDKKDDEQEQQATAAPIESPKQEQQ 498


>02_02_0524 + 11179224-11179469,11179543-11181465
          Length = 722

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +2

Query: 293 KETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTI 472
           ++  R   L    R  +D  L +P   +   + K K P L   L KKV S+ D+  E+ +
Sbjct: 636 QDVLREAALASTSRSAADYDLPSPAVSRRGRRGKTKGPTLASMLKKKVTSK-DRIAER-L 693

Query: 473 LNVKPKLQNFQKINSNLSVS 532
           LN + +    ++++    +S
Sbjct: 694 LNARARDATIREVSHTEDMS 713


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,768,364
Number of Sequences: 37544
Number of extensions: 153513
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)