Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h24f
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 34 0.070
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 34 0.070
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 34 0.070
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 32 0.28
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 32 0.37
Z49071-6|CAA88876.2| 292|Caenorhabditis elegans Hypothetical pr... 30 1.5
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 29 2.0
U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical pr... 29 3.5
U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical pr... 29 3.5
U13876-1|AAM48538.1| 353|Caenorhabditis elegans Hypothetical pr... 29 3.5
U23517-1|AAB93336.1| 245|Caenorhabditis elegans Hypothetical pr... 28 4.6
U23171-5|AAC46705.2| 158|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical... 28 4.6
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 4.6
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 28 6.0
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 28 6.0
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 28 6.0
AF038608-11|AAC25815.1| 319|Caenorhabditis elegans Serpentine r... 28 6.0
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 27 8.0
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 34.3 bits (75), Expect = 0.070
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Frame = +2
Query: 290 QKETRRTMKLNRN--LRQLSD--NTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 457
+K+ R +L+ N L ++D + L P + K +K+K+K K +K+ + Q
Sbjct: 8546 KKDESRPDRLDDNCVLTDVTDGLSILSPPPKAKKHLKKKKKHHKKEKIAVKETE-----Q 8600
Query: 458 REKTILNVKPKLQNFQKINSNLSVSAIFL-----SGTMTNKTGSS*KLNSYGY 601
EKT+ ++KP++ ++ SN S IF+ +G + T + LN Y Y
Sbjct: 8601 DEKTVSHLKPEISGMERKRSNSGSSDIFVDVDIEAGEESIHTDALVDLNFYDY 8653
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 34.3 bits (75), Expect = 0.070
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Frame = +2
Query: 290 QKETRRTMKLNRN--LRQLSD--NTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 457
+K+ R +L+ N L ++D + L P + K +K+K+K K +K+ + Q
Sbjct: 8566 KKDESRPDRLDDNCVLTDVTDGLSILSPPPKAKKHLKKKKKHHKKEKIAVKETE-----Q 8620
Query: 458 REKTILNVKPKLQNFQKINSNLSVSAIFL-----SGTMTNKTGSS*KLNSYGY 601
EKT+ ++KP++ ++ SN S IF+ +G + T + LN Y Y
Sbjct: 8621 DEKTVSHLKPEISGMERKRSNSGSSDIFVDVDIEAGEESIHTDALVDLNFYDY 8673
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 34.3 bits (75), Expect = 0.070
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Frame = +2
Query: 290 QKETRRTMKLNRN--LRQLSD--NTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 457
+K+ R +L+ N L ++D + L P + K +K+K+K K +K+ + Q
Sbjct: 8566 KKDESRPDRLDDNCVLTDVTDGLSILSPPPKAKKHLKKKKKHHKKEKIAVKETE-----Q 8620
Query: 458 REKTILNVKPKLQNFQKINSNLSVSAIFL-----SGTMTNKTGSS*KLNSYGY 601
EKT+ ++KP++ ++ SN S IF+ +G + T + LN Y Y
Sbjct: 8621 DEKTVSHLKPEISGMERKRSNSGSSDIFVDVDIEAGEESIHTDALVDLNFYDY 8673
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 32.3 bits (70), Expect = 0.28
Identities = 28/72 (38%), Positives = 35/72 (48%)
Frame = -3
Query: 463 LSLFVVSTFYLFYQLXXXXXXXXXXXXXXFLLHRSHQRVVA*LPQVSIQFHRPPRFLLLP 284
LSLF+V T Y FY + LH Q VVA L S+QF PP LLL
Sbjct: 3 LSLFIVKTVYTFYWVVLEKVQ----------LHSFKQYVVA-LRFESVQFKNPP-ILLLL 50
Query: 283 VCDRLVLRKILI 248
+ +R+ L+ I I
Sbjct: 51 IYNRIFLQSITI 62
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = +2
Query: 287 KQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 466
K+ + T ++ +LR++S + H + K SP +PK+ K S ++ +K
Sbjct: 352 KKTASEGTSRIEDDLRRMSSTKEHHHKEHIHHAESK-DSPNMPKRYAKLKSSESSRESQK 410
Query: 467 TILNVKPKLQNFQKINS 517
T + +P L+ + ++S
Sbjct: 411 TSVTRRPSLKKNRSVDS 427
>Z49071-6|CAA88876.2| 292|Caenorhabditis elegans Hypothetical
protein T22C8.4 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 334 AVKRQHVDDSDAEETPRXXXXXXPVITETTDKKGKKSIRQTKRENYLKRQAQAAELSKNQ 513
A KR+ +D S + + + +K+ K+ R KRE LK++++ A KN+
Sbjct: 86 APKRRRIDKSSTSSEAKIQRMED-AMKKKLEKEQKEKARLKKREETLKKKSETAAAKKNK 144
Query: 514 L 516
+
Sbjct: 145 I 145
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 287 KQKETRRTMKLNR-NLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRY--DKQ 457
K+KE T+K+ + + + + + +K+ R KR+ + ++ K+L KK++ RY K+
Sbjct: 680 KRKEIVLTLKVRKASTAKKTKKAMQEKKRKRLRAKRRLRRFIMRKRLKKKLRKRYRGAKR 739
Query: 458 REK 466
R K
Sbjct: 740 RRK 742
>U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical
protein T13A10.1 protein.
Length = 155
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 362 PMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPKLQN 499
P ++K ++K + K P PK+ K +++E T VKPK Q+
Sbjct: 70 PKKEKSKMKSEVKEPDAPKKENDKTSEDKKEKQEDTFDAVKPKQQD 115
>U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical
protein F57B9.7b protein.
Length = 373
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/85 (20%), Positives = 41/85 (48%)
Frame = +2
Query: 302 RRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNV 481
++ + N+ +R+ + T ++H + + ++P Q + V +K K + +
Sbjct: 232 QKLVDTNKKMRKDYEELEQTIYTQRHARNARDSANVIPNQGVDDV----NKDAAKQLAEM 287
Query: 482 KPKLQNFQKINSNLSVSAIFLSGTM 556
K K+Q+ ++ N+N + I + G M
Sbjct: 288 KLKMQDLERENTNQQGNVIRMEGQM 312
>U13876-1|AAM48538.1| 353|Caenorhabditis elegans Hypothetical
protein F57B9.7a protein.
Length = 353
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/85 (20%), Positives = 41/85 (48%)
Frame = +2
Query: 302 RRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNV 481
++ + N+ +R+ + T ++H + + ++P Q + V +K K + +
Sbjct: 212 QKLVDTNKKMRKDYEELEQTIYTQRHARNARDSANVIPNQGVDDV----NKDAAKQLAEM 267
Query: 482 KPKLQNFQKINSNLSVSAIFLSGTM 556
K K+Q+ ++ N+N + I + G M
Sbjct: 268 KLKMQDLERENTNQQGNVIRMEGQM 292
>U23517-1|AAB93336.1| 245|Caenorhabditis elegans Hypothetical
protein D1022.3 protein.
Length = 245
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 372 FCIGVINVLSLNCRRFRFNFIVLLVSF 292
FCIG + SL+C R+RF+ I ++SF
Sbjct: 123 FCIG--GLCSLDCARYRFDGIRAVISF 147
>U23171-5|AAC46705.2| 158|Caenorhabditis elegans Hypothetical
protein K02A2.1 protein.
Length = 158
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 372 FCIGVINVLSLNCRRFRFNFIVLLVSF 292
FCIG + SL+C R+RF+ I ++SF
Sbjct: 36 FCIG--GLCSLDCARYRFDGIRAVISF 60
>AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical
protein F36H12.5 protein.
Length = 197
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 362 PMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREKTILNVKPKLQN 499
P ++K ++K + K P PK+ K + +KQ E T VKPK Q+
Sbjct: 70 PKKEKSKMKSEVKEPDAPKKDDKTSDEKKEKQ-EDTFDAVKPKQQD 114
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 287 KQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 466
++KE +R M+ RN+ + +T + K+K+K K K K + +K++ K
Sbjct: 258 RRKEKKREMRAVRNVSEDDSSTSSESEESDFEQKKKKKVKKSKKSKKDKKKEKKEKKKSK 317
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 401 SPLLPKQLIKKVKS-RYDKQREKTILNVKPKLQNFQKINSNL 523
SP+LP+Q+ K+KS D+ +E N Q F K+NS+L
Sbjct: 142 SPVLPEQISAKIKSDLLDQLKEAACSNA---TQFFSKLNSHL 180
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 365 MQKKHRVKRKRKSPLLPKQLIKK-VKSRYDKQREK 466
+ KK K K +SP+ PK++ K VK++ DK+ +K
Sbjct: 3 VHKKTEKKTKTESPVKPKKVASKHVKNKKDKKDKK 37
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
defective protein 45 protein.
Length = 1076
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/72 (22%), Positives = 42/72 (58%)
Frame = +2
Query: 287 KQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQREK 466
+Q E ++ +K ++ L ++ N + + K+ +++ R P+Q++++ + R DK+R +
Sbjct: 638 EQDEIQKKIKQDQ-LYKMQQNAIYQEIIKEKGLEQFRDMD--PEQVLREQRERLDKERAE 694
Query: 467 TILNVKPKLQNF 502
T ++ + +NF
Sbjct: 695 TQRRLQQQEKNF 706
>AF038608-11|AAC25815.1| 319|Caenorhabditis elegans Serpentine
receptor, class z protein79 protein.
Length = 319
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 384 TRCFFCIGVINVLSLNC----RRFRFNFIVLLVSFCFLFAI 274
T C F I + + + C RRF F F V++V+ C +F +
Sbjct: 72 TYCMFGILIFCNIMILCNNPGRRFFFGFFVIVVAMCIVFTL 112
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 281 NRKQKETRRTMKLNRNLRQLSDNTLMTPMQKKHRVKRKRKSPLLPKQLIKKVKSRYDKQR 460
N ++KE + K + + T + K+ K+K K + KK K+ DK++
Sbjct: 105 NDEKKEKSKDDKKEESKEDKKEKTKTEDNEGKNEEKKKEKKEEKKDEKEKKEKTEDDKEK 164
Query: 461 EK 466
EK
Sbjct: 165 EK 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,357,301
Number of Sequences: 27780
Number of extensions: 170236
Number of successful extensions: 942
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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