Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h24f
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    25   0.77 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.4  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 371 KKHRVKRKRKSPLLPKQLIKKVKSRYDKQ 457
           +KH+  RK ++P   +QL+   K   +KQ
Sbjct: 4   RKHKPNRKPRTPFTTQQLLSLEKKFREKQ 32


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 410 LPKQLIKKVKSRYDKQREKTILNV 481
           LP+ + K+    + K++ KTIL V
Sbjct: 61  LPQPISKRKDKEHKKKKSKTILAV 84


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 410 LPKQLIKKVKSRYDKQREKTILNV 481
           LP+ + K+    + K++ KTIL V
Sbjct: 61  LPQPISKRKDKEHKKKKSKTILAV 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,712
Number of Sequences: 438
Number of extensions: 2124
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)