Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h13r
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0120 + 16242220-16242483,16242538-16243424,16244604-162452...    30   1.6  
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           29   3.8  
10_08_0119 - 14952786-14953931,14954709-14954831                       29   5.0  
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193...    28   6.6  
11_04_0162 + 14291835-14292281,14292330-14292697,14292836-142930...    28   8.7  
10_08_0124 + 14992399-14993478                                         28   8.7  

>01_04_0120 +
           16242220-16242483,16242538-16243424,16244604-16245264,
           16245582-16245943,16246071-16246140,16246666-16246740
          Length = 772

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +2

Query: 137 INKLEEQSKLLNCKTFRCAVRG-----ILCELLGQLTVWPSNIHSTSFRS*KYEFEISIA 301
           ++KL E+ K   C T  C++R       LC+L   ++V P     TS  S +    +S  
Sbjct: 334 LHKLPEKKKDPGCPTITCSIRAQQFDQALCDLGASISVMPKLTSLTSSTS-RIRRRLSRL 392

Query: 302 FEGSTLP 322
           F+GS  P
Sbjct: 393 FKGSGSP 399


>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 560 HANCLLSSVVSTVLEISRQTLTSPNYKNEFF 652
           HAN  L+S   TVL+++R+  T+PN K   F
Sbjct: 641 HAN-FLASTHGTVLKLNREATTTPNPKRTLF 670


>10_08_0119 - 14952786-14953931,14954709-14954831
          Length = 422

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 92  NYFGLS*NIIIYDWYINKLE-EQSKLLNCKTFRCAVRGILCELLGQLTVWPSNIH 253
           N+   S N + ++ +I + + ++S+ LN   F  AVR ++ E     TV PSN+H
Sbjct: 182 NFSVASSNALGFENFIRRDDLQRSEYLNDDCFAIAVRLVITEESPSFTVPPSNMH 236


>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
            32619687-32619776,32620389-32620462,32621149-32621260,
            32621413-32621468,32621826-32621880,32621965-32622021,
            32622696-32622797,32623467-32623547,32623756-32623808,
            32625245-32625314,32626540-32626603,32627339-32627487,
            32627564-32627719,32628011-32628108,32628763-32628847,
            32628932-32628997,32629066-32629125,32629408-32629494,
            32630307-32630360,32630538-32630576,32630651-32630779,
            32630859-32630911,32630984-32631032,32632240-32632298,
            32633111-32633259,32633338-32633492,32633719-32633847,
            32633932-32634017,32634220-32634335,32634429-32634541,
            32635335-32635458,32635540-32635658,32636289-32636490,
            32636586-32636757,32637852-32638176,32638442-32638529,
            32638970-32639059,32639169-32639370,32639681-32639705
          Length = 1450

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
 Frame = +2

Query: 542  CQRKDLHANC----LLSSVVSTVLEISRQTL-TSPNYKNE 646
            C +  + +NC    L SS V +VL+I    L TSPNYKN+
Sbjct: 991  CLQTFVGSNCSKGNLESSYVKSVLDIYELVLQTSPNYKND 1030


>11_04_0162 +
           14291835-14292281,14292330-14292697,14292836-14293050,
           14293090-14294129
          Length = 689

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +2

Query: 137 INKLEEQSKLLNCKTFRCAVRG-----ILCELLGQLTVWPSNI 250
           ++KL E+ K   C T  C++R       LC+L   ++V P ++
Sbjct: 449 LHKLPEKKKYPGCPTITCSIRAQQFDQALCDLGASVSVMPKDV 491


>10_08_0124 + 14992399-14993478
          Length = 359

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 152 EQSKLLNCKTFRCAVRGILCELLGQLTVWPSNIH 253
           ++S+ LN   F  AVR ++ E     TV PSN+H
Sbjct: 141 QRSEYLNDDCFAIAVRLVITEEPSSFTVPPSNMH 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,053,721
Number of Sequences: 37544
Number of extensions: 402115
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)