Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h13r
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr...    31   1.1  
Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 168  NSFDCSSSLLIYQSYMMMFYDNPK*LQSNILHSVSIVLCP*EAQPEPSVRRF 13
            NSFD  +++L+  + +M+  D  K   + + HS   + CP   +PEP +  F
Sbjct: 2275 NSFDFKATVLVPPTIIMLDKDKNK---TAVEHSTVTLSCPATGKPEPDITWF 2323


>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 168  NSFDCSSSLLIYQSYMMMFYDNPK*LQSNILHSVSIVLCP*EAQPEPSVRRF 13
            NSFD  +++L+  + +M+  D  K   + + HS   + CP   +PEP +  F
Sbjct: 2275 NSFDFKATVLVPPTIIMLDKDKNK---TAVEHSTVTLSCPATGKPEPDITWF 2323


>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 168  NSFDCSSSLLIYQSYMMMFYDNPK*LQSNILHSVSIVLCP*EAQPEPSVRRF 13
            NSFD  +++L+  + +M+  D  K   + + HS   + CP   +PEP +  F
Sbjct: 2275 NSFDFKATVLVPPTIIMLDKDKNK---TAVEHSTVTLSCPATGKPEPDITWF 2323


>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 168  NSFDCSSSLLIYQSYMMMFYDNPK*LQSNILHSVSIVLCP*EAQPEPSVRRF 13
            NSFD  +++L+  + +M+  D  K   + + HS   + CP   +PEP +  F
Sbjct: 2275 NSFDFKATVLVPPTIIMLDKDKNK---TAVEHSTVTLSCPATGKPEPDITWF 2323


>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
            precursor protein.
          Length = 5198

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 168  NSFDCSSSLLIYQSYMMMFYDNPK*LQSNILHSVSIVLCP*EAQPEPSVRRF 13
            NSFD  +++L+  + +M+  D  K   + + HS   + CP   +PEP +  F
Sbjct: 2275 NSFDFKATVLVPPTIIMLDKDKNK---TAVEHSTVTLSCPATGKPEPDITWF 2323


>Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical
           protein C47G2.4 protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 531 YNKHVNERTCMPIVCYPLWYQQYWRLVVRPLQVQTTKMNFSEIYFIXNYF 680
           YN  ++  TC+PI     WY +      R L + T  M F  ++    +F
Sbjct: 339 YNLELSRNTCVPIGVRRFWYTRLQTPFCRILGIVTVFMTFFVLFSECTFF 388


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 234  YGLLIFILLHFVPRNMSSK-SQLLLKVPPYLNVTASWNK 347
            +GL +  L +F+    S   +Q+LLKV P+L +   W K
Sbjct: 1223 FGLFLQALWNFIICGYSDGLNQMLLKVSPWLELVRQWEK 1261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,053
Number of Sequences: 27780
Number of extensions: 362482
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)