Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h13r
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.73 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +1

Query: 532 TINMSTKGLACQLFVILCGINSIGD*SSDPYKSKLQK*IFQKYILYXITLHEIILVHFF 708
           T +  + G+   L +   G+ +  D    PY + L   +F  +     T+ +  +VH+F
Sbjct: 242 TADRVSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQFAVVHYF 300



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 222 PSNSHNIPRTAHLNVLQFNSFDCSSSLLIYQ 130
           P N  N P       LQF SF  +   +IY+
Sbjct: 131 PMNLENFPMDTQRCPLQFGSFGYTKRDVIYK 161


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 440 FTMFPLKIVLSVVLANYGV 384
           + M  LKIVLS +L N+ V
Sbjct: 493 YAMLKLKIVLSTILRNFRV 511


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 330 LRSGKVEPSKAIEISN 283
           L  GK++P+K + ISN
Sbjct: 254 LEDGKLKPNKKVRISN 269


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 459 LWFLIPHLIHGGKKAGPD 512
           +WFL   ++HG     PD
Sbjct: 11  VWFLSALVVHGAVAGNPD 28


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 459 LWFLIPHLIHGGKKAGPD 512
           +WFL   ++HG     PD
Sbjct: 11  VWFLSALVVHGAVAGNPD 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,709
Number of Sequences: 438
Number of extensions: 4879
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)