Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h13f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    77   2e-15
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    31   0.100
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    29   0.40 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   0.93 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.2  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    28   1.2  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   1.6  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   1.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.8  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   5.0  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   6.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.5  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   8.7  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   8.7  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   8.7  

>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 36/99 (36%), Positives = 62/99 (62%)
 Frame = +3

Query: 282 FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPE 461
           + + ++  +Q+  KI +L+ + +EHK+V++TL  ++  R+CFRM  GVLVERTV  V+P 
Sbjct: 15  YNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPI 74

Query: 462 LISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 578
           L +  E +  A+  L DQ  Q   E  K+ +++ I++ R
Sbjct: 75  LKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQVVR 113


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 31.5 bits (68), Expect = 0.100
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
 Frame = +3

Query: 342 ELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVA-EVLPELISNYE-----QLPKAIQS 503
           E+NE  I+ E  +   L  K + +  G L ER VA     E I  +E     ++ +   S
Sbjct: 379 EINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRARIEGIKAHEMFLNNRVSEINSS 438

Query: 504 LEDQLTQKGEEINKYIEEHDIRIQRADRT 590
           LE QLT + E  +++     +++QR D T
Sbjct: 439 LEKQLTTQKELRSRFEILFPVKLQREDFT 467



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
 Frame = +3

Query: 291  LRNEQRQLGSKISELQMELNE----HKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLP 458
            L N +++L  K+++L  ++NE     K + ++    +L +K  ++      + + A  L 
Sbjct: 856  LANNEQKL--KLTKLNFQVNELEQLEKDINKSSEDCDLQKK--KLLEVSSKQGSQAPFLN 911

Query: 459  ELISNYEQLPKAIQSLEDQLTQKGEEINKYIEE 557
            EL S YE+L   IQ +  +   +  E N+Y+ +
Sbjct: 912  ELESEYEKLEADIQEMAQKSRTEILEANEYLHQ 944


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 24/115 (20%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
 Frame = +3

Query: 261  NEEIFAGFQTLRNEQRQLGSKISELQMELNEHKI--VIETLRGVE--LTRKCFRMFGGVL 428
            NE +    +TL+++  ++G     ++  + + K+  + E L+ V+  L +  F+      
Sbjct: 912  NEGLVTEIKTLQDKIMEIGG----IRYRIQKSKVDDLHEQLKFVKDKLNKMSFKKKKNEQ 967

Query: 429  VERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQRADRTM 593
              ++    L  L S Y+   ++I +L+ +L    + +NKY++EH  R++  +  +
Sbjct: 968  RSQSFQVELSNLTSEYDTTTESIATLKTEL----QSLNKYVDEHKSRLREFENAL 1018


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 309 QLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLP 488
           +L +KI+E +   NEHK  +  +RG           GG L E+  AE+  EL  N     
Sbjct: 20  ELDAKINEAKKRFNEHKEKLGAIRG-----------GGSLQEKN-AELRAEL-DNIRNAQ 66

Query: 489 KAIQSLEDQLTQKGEEINKYIEEHDIRIQRADRTMP 596
            AI+S +  L  K +  ++ +++    +    +T+P
Sbjct: 67  AAIRSSKQTLINKVKAQDELLKKKVKELTAMKKTVP 102


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 441 VAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHD 563
           +++ L E+ S Y      + +LEDQL  +   INK+  E D
Sbjct: 734 ISKRLQEIESLYRDRELLVTNLEDQLVDQTVTINKFAFERD 774


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 258 TNEEIFAGFQ---TLRNEQ-RQLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGV 425
           T +EI   F+   T R  Q   L SKI E + +LN  K+  ETLR  E T+   +  G +
Sbjct: 60  TAKEIIDAFERDSTQRTLQIESLESKIGEQERDLNNEKLASETLR--EKTQLLEKENGAL 117

Query: 426 LVE 434
            VE
Sbjct: 118 KVE 120


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 375 KSQLRSYVRLTPFVILIFYSLIDVVHYEEFGNQQRFP 265
           K+  R+Y+R  P  + IF +   +V     GN Q FP
Sbjct: 223 KNYFRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFP 259


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 291 LRNEQRQLGSKISELQMELNEHKIVIETL 377
           L+N+  +  +++ ELQ +LN+ K  IETL
Sbjct: 804 LKNKLSEESTRLQELQSQLNQDKNQIETL 832


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 228 AKNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKI 362
           +K    + K+T E + +    L  E+ +L S +S+LQ  LN+ ++
Sbjct: 757 SKGEKDLRKRTQERLISENDKLLAERERLMSLVSDLQTFLNQQQL 801


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 285 QTLRNEQRQLGSKISELQMELNEHKIVIETLR 380
           + L+NE+R+L  K++E +  L+    ++ TLR
Sbjct: 644 ENLQNEERKLQEKVNEHESLLSRTNDILSTLR 675


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 40   LVNLSFC*FKIHLHVLLFLKLSVNRDYFYFSKRVKLITLFLKLYKKK 180
            L+ LS C F    H L +L    N  +FY S  +++ T     +KKK
Sbjct: 1006 LLPLSNCDFNEQKHEL-YLSWRTNASFFYASSSLEIDTPCFNDFKKK 1051


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 454 NTSATVRSTSTPPNIRKHLRVNSTP 380
           +T  +V++TSTP N+R    +N  P
Sbjct: 567 STVESVKATSTPLNVRPKYNINYPP 591


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 288 TLRNEQRQLGSKISELQMELNEHKIVIE 371
           TLR   RQLGS + EL+  +  H+   E
Sbjct: 330 TLRKVTRQLGSLLHELECFIQHHEYTKE 357


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 411 SGNTYGSTPLPAKSQLRSYVRLTPFVILIFY 319
           S  TY ++ LPA  QL S++ +      +F+
Sbjct: 169 SNTTYTNSDLPASKQLESFISMNLSYSKVFF 199


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +3

Query: 459 ELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQRAD 584
           EL +NY+    A+Q L+ +L    +E+++ I   +++  R++
Sbjct: 504 ELSNNYDLQGAAVQYLQRRLRMVEDELHEAINSKNVQQSRSE 545


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 142 KLITLFLKLYKKKS*NFDFHFPYLPRVKWLKIH 240
           +L+ +FL        NF FH+P  P+V+    H
Sbjct: 7   RLVAIFLVEKTTSGANFVFHWPLQPQVRLQATH 39


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 327 SELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERT 440
           ++L+  L +  + I  ++GV +T+   R+F  ++ E T
Sbjct: 129 NQLKGCLKKDAVAISCIKGVSVTKDRVRLFSDIIEENT 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,814
Number of Sequences: 5004
Number of extensions: 48466
Number of successful extensions: 153
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)