Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h13f
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0122 + 20333025-20333468 98 4e-21
12_02_0365 + 18045340-18045783 97 7e-21
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 30 1.2
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 30 1.6
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 5.0
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 28 5.0
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 28 5.0
12_02_0479 - 19522172-19523158 27 8.8
10_05_0004 + 7717748-7717798,7718107-7718317,7719424-7720079,772... 27 8.8
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046... 27 8.8
>11_06_0122 + 20333025-20333468
Length = 147
Score = 98.3 bits (234), Expect = 4e-21
Identities = 51/122 (41%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Frame = +3
Query: 225 MAKNTSKVGKKT-NEEIFAG-FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTR 398
MA GK+ NE+I A + +R+E QL +KI+EL+ME++EH +VI + ++ +R
Sbjct: 1 MASKAGGDGKEAINEQIIANTYGNMRSEMTQLYTKITELEMEVSEHSLVIGAIEPLDHSR 60
Query: 399 KCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 578
+C+RM GGVLVERT+ EVLP + N E L + I + + L +K +EI ++ ++ IRI++
Sbjct: 61 RCYRMVGGVLVERTIREVLPAVHRNKEGLEEVIARMHEALEKKKKEITEFELKYKIRIRK 120
Query: 579 AD 584
AD
Sbjct: 121 AD 122
>12_02_0365 + 18045340-18045783
Length = 147
Score = 97.5 bits (232), Expect = 7e-21
Identities = 50/122 (40%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Frame = +3
Query: 225 MAKNTSKVGKKT-NEEIFAG-FQTLRNEQRQLGSKISELQMELNEHKIVIETLRGVELTR 398
MA S K+ NE++ A + +R+E QL SKI+EL+ME++EH +VI + ++ +R
Sbjct: 1 MAGQPSGADKEVINEQMVANMYANMRSEMNQLYSKITELEMEVSEHSLVIGAIEPLDPSR 60
Query: 399 KCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQR 578
+C+RM GGVLVERT+ EVLP + N E L + + + + L +K +EI ++ ++ IRI++
Sbjct: 61 RCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVVARMNEALEKKKKEITEFELKYKIRIRK 120
Query: 579 AD 584
AD
Sbjct: 121 AD 122
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 234 NTSKVGKKTNEEIFAGFQTLRNEQRQLGSKIS-ELQME-LNEHKIVIETLRGVELTRKCF 407
N+ ++ K N+ F+G Q R+LG+ + ++ ++ LN + L ++ K
Sbjct: 217 NSKQIKAKVNKYAFSGGQDTVELHRELGANLDVDVSIKYLNFFLQDDDELEHIKKEYKAG 276
Query: 408 RMFGGVLVERTVAEVLPELISNYEQ 482
RM G + +R + EVL EL++ +++
Sbjct: 277 RMLTGEVKQRLI-EVLSELVARHQR 300
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 KVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLRG-VELTRK 401
KV + EEI + +QR+ IS+LQ E ++++ETLR +E TR+
Sbjct: 357 KVNAEAQEEIKRQAEAHLRQQREQKEVISKLQESEKEIRLLVETLRSKLEDTRE 410
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 297 NEQRQLGSKISELQMELNEHKIVIETLR 380
++ R+L +EL+ +L EH + IETLR
Sbjct: 214 DDVRRLEKSNAELREQLEEHVVTIETLR 241
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Frame = +3
Query: 231 KNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIET------LRGVEL 392
+NTS+ K T ++ + + +Q+Q +KISEL+++L++ ++ ++ L +E+
Sbjct: 554 ENTSRELKSTILDLNSEKDAVLLQQQQSLAKISELELQLSKTQLELKNSEQKMQLLELEI 613
Query: 393 TRKCFRMFGGVLVERTVAEVLPELISNYEQLPKAIQSLEDQLTQKGEEINK 545
T+K M ++ L + Q ++ S+E +Q EE+N+
Sbjct: 614 TQKSESM-------DSLTLSLKDETEKRVQAETSLMSMESMYSQSQEEVNR 657
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 82 VLLFLKLSVNRDYFYFSKRVKLITLFLKLYKKKS*NFDFHFPYLP 216
V+L L +S R YFY + KL+ + ++ NFD FP +P
Sbjct: 38 VMLLLFVSETRSYFYSATETKLV-VDTSRGERLRVNFDVTFPSVP 81
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 309 QLGSKISELQMELNEHKIVIETLRGVELTRKCFRMFGGVLVERTVAEVLPELISNYEQLP 488
+L K+ E++MEL + VIE L LT K + G + R +A + +++ Y
Sbjct: 40 ELPGKVEEIRMELTTMENVIEQLDTAHLTDKVIK--GWIAEVRKLAYHVEDVMDKYSY-- 95
Query: 489 KAIQSLEDQLTQK 527
A+Q E+ +K
Sbjct: 96 HALQMEEEGFLKK 108
>12_02_0479 - 19522172-19523158
Length = 328
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 483 AVHNC*SALATPQLRCVRQARPQTSGNTYGSTPLPAKSQLRSYVRLTPFVILIFYSLI 310
AVH +A RCV A P + S P A++QL S+ L +F +L+
Sbjct: 114 AVHAVVAARGRGARRCVGGAAPSMASLVRASYPAMARTQLASFGALLSAHAAVFAALL 171
>10_05_0004 +
7717748-7717798,7718107-7718317,7719424-7720079,
7721296-7721469,7721562-7721678,7722820-7722999,
7723244-7723290,7724068-7724401
Length = 589
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 267 EIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLR 380
E+F L E R+L S++ L E + +VIE +R
Sbjct: 368 EVFGEKSILTTEARELQSRLQRLSDERKNYLVVIEEIR 405
>01_03_0071 +
12203227-12203368,12203551-12203703,12204622-12204683,
12204749-12204830,12206029-12206126,12206240-12206657,
12206793-12206915,12207159-12207178
Length = 365
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 449 LSYGAFDKHAPKHPETLTGQLHSPQSLNY 363
LS +++H+ K P+ LT H P+++++
Sbjct: 235 LSQTRYNEHSNKQPKLLTANYHGPKNMHH 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,622
Number of Sequences: 37544
Number of extensions: 276651
Number of successful extensions: 669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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