Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h13f
         (608 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    26   1.1  
AF117752-1|AAD38338.1|  155|Anopheles gambiae serine protease 2A...    26   1.1  
Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...    24   3.3  
AY745222-1|AAU93489.1|  276|Anopheles gambiae cytochrome P450 pr...    24   4.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   4.4  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    23   7.7  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 234 NTSKVGKKTNEEIFAGFQTLRNEQRQLGSKISELQMELNEHKIVIETLR 380
           N  +  KK   E     +    E  Q+G KISE++  + +  + I+ ++
Sbjct: 730 NDLETSKKNINEYDRQLEDFTRELDQIGPKISEIERRMQQRDMKIQDIK 778


>AF117752-1|AAD38338.1|  155|Anopheles gambiae serine protease 2A
           protein.
          Length = 155

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 426 LVERTVAEV-LPELISNYEQLPKAIQSLEDQLTQKGEEIN 542
           L++ TV E+ L E +  +    + I   EDQL   GE++N
Sbjct: 100 LMKGTVYEIPLDECVQRFRDAKQRISLGEDQLCALGEKVN 139


>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 447 QLRCVRQARPQTSGNTYGSTPLPAKSQLRSY 355
           ++RC  + RP   G TYG       +QL+ Y
Sbjct: 65  RVRCGGRKRPVHKGCTYGKPKSHGVNQLKPY 95


>AY745222-1|AAU93489.1|  276|Anopheles gambiae cytochrome P450
           protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 307 RCSLRRVWK 281
           RCSLRR+WK
Sbjct: 5   RCSLRRMWK 13


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
 Frame = +3

Query: 231 KNTSKVGKKTNEEIFAGFQTLRNEQRQLGSKIS-ELQMELNEHKIVIETLRGVELTRKCF 407
           ++  K  KK  EE  A  ++L  ++ ++ +K++  L    +E K+++E     +L  +  
Sbjct: 417 QDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKDETKVLLEEKE--KLQTELI 474

Query: 408 RMFGGVLVERTVAEVLP-EL-ISNYEQLPKAIQSLEDQLTQKGEEINKYIEEHDIRIQRA 581
            +   V   ++   +   EL I  ++++ +  + LE  L    EE  K +EE   R+Q  
Sbjct: 475 ELKRAVDESKSALSIAESELKICQHDEVTER-RKLES-LRYSYEETEKDLEEKRARLQTL 532

Query: 582 DRTMP 596
           +  +P
Sbjct: 533 EEALP 537


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 450  PQLRCVRQARP-QTSGNTYGSTPLPAKSQLRSYVRLTPFVILIFYSLIDVVHYEEFGN 280
            P+ R VRQARP   SG  Y   P+  K   R  V    ++ +    +   VH E   N
Sbjct: 1412 PEQR-VRQARPFSISGVDYAG-PIMVKGTHRRAVPTKGYISIFVCFVTKAVHIELVSN 1467


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,449
Number of Sequences: 2352
Number of extensions: 10226
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)