Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h13f
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.3  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 472 IMNSYLRPSSP*KTNSLRRERRSINTLRN 558
           I N + RPS     N  +R   S+N+LRN
Sbjct: 22  IQNVHTRPSKEPICNICKRVYSSLNSLRN 50


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 246 VGKKTNEEIFAGFQTLR 296
           VG  T+EE+  G QTL+
Sbjct: 14  VGAMTHEELKTGIQTLQ 30


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 589 VRSARWMRISCSSMY 545
           V +  WM +SCSS +
Sbjct: 409 VNAGMWMWLSCSSFF 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,534
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)