Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h12r
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    26   0.31 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    26   0.31 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.2  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   3.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.0  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFND 275
           I ++LS  + Y+N+ +Y   Y NN+N+
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYNN 107


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFND 275
           I ++LS  + Y+N+ +Y   Y NN+N+
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYNN 107


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFND 275
           I ++LS  + Y+N+ +Y     NN+N+
Sbjct: 314 IISSLSNNYKYSNYNNYNNYNNNNYNN 340


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 225 YNNHYSY*KLYQNNFND 275
           YNN+Y+    Y NN+N+
Sbjct: 330 YNNNYNNYNNYNNNYNN 346



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 225 YNNHYSY*KLYQNNFNDL 278
           YNN+ +Y   Y NN+  L
Sbjct: 334 YNNYNNYNNNYNNNYKKL 351


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
           I ++LS + ++NN+ +Y KL   N N
Sbjct: 81  IISSLSNKTIHNNNNNYKKLQYYNIN 106


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
           I ++LS + ++NN+ +Y KL   N N
Sbjct: 81  IISSLSNKTIHNNNNNYKKLQYYNIN 106


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
           I ++LS + ++NN+ +Y KL   N N
Sbjct: 81  IISSLSNKTIHNNNNNYKKLQYYNIN 106


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
           I ++LS + ++NN+ +Y KL   N N
Sbjct: 81  IISSLSNKTIHNNNNNYKKLQYYNIN 106


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 204 NLSFRFLYNNHYSY*KLYQNNFN 272
           N ++++ YNN Y+Y     NN+N
Sbjct: 93  NNNYKYNYNNKYNY---NNNNYN 112


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 225 YNNHYSY*KLYQNNFN 272
           YNN+Y+  KLY N  N
Sbjct: 314 YNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 225 YNNHYSY*KLYQNNFN 272
           YNN+Y+  KLY N  N
Sbjct: 325 YNNNYNSKKLYYNIIN 340


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFN 272
           I ++LS + ++NN+ +Y KL   N N
Sbjct: 314 IISSLSNKTIHNNNNNYKKLQYYNIN 339


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 204 NLSFRFLYNNHYSY*KLYQNNFND 275
           N ++++ YNN+      Y NN+N+
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNN 349


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 660 CKSKSRYETCIIMNTSFEITNY 725
           C +  ++  C+I    F IT Y
Sbjct: 111 CLTAQKFSRCVIDYVKFHITQY 132


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 195 IAANLSFRFLYNNHYSY*KLYQNNFND 275
           I ++LS + ++NN+      Y NN+N+
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNNNYNN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,378
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)