Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h08f
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    29   0.55 
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi...    27   2.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.1  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   6.8  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    25   9.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.0  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 166 DTNTQLCVTW---LIQYSQAMKLATELSTKKVSTDVCGFSQLKPMGQNRSYVEVYPIDES 336
           D ++ +   W   ++ +S+ +  ATE  +  +  DVC + +L P     +   +  I   
Sbjct: 409 DPSSTISTAWTGEILDFSEKLNFATEKWSAPLEIDVCYWRKLAPFQNMDTNTFLETITNP 468

Query: 337 KPVMRCPIKSLVVKYNKDLLNLK 405
           K + +   K + +++ KD+L LK
Sbjct: 469 KKLYKICQKYIFMRW-KDMLILK 490


>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 220 KLATELSTKKVSTDVCGFSQLKPMGQNRSYVEVYPIDESK 339
           K    L T++++    GF  ++P+G NRS  E   ++E +
Sbjct: 28  KEEVRLETQELAIKQFGFRTIRPIGLNRSMQEQLDLEEQE 67


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 256 TDVCGFSQLKPMGQNRSYVEVYPIDESKPVMRCPIKSLVVKYNKDLLNLKSIHEIHRVRR 435
           +D C F  LK + +N      YP  E   ++R  IK L +  ++  L+  S +  +  R 
Sbjct: 581 SDYCHFKLLKKVNRNLQIKTNYPTQEFH-LLRPTIKILQISKHEYFLHFSSSYIFNDARE 639

Query: 436 QIPYALR 456
           +  Y ++
Sbjct: 640 RDVYGVK 646


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 576 STDASSRGVSS*LRFGFSIIFSVSMVYGQILRLGLSPV 463
           STDASS   S+   FG    F  + V+GQ    G +PV
Sbjct: 504 STDASSGAKSNTPVFGQPSTFGQAPVFGQPSAFGQAPV 541



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 479 NLSIWP*TMETEKMMEKPKRNQLLTPLELASVERA 583
           N SI+  T ET+   +KP+ N L  P   A  +++
Sbjct: 714 NFSIFGKTAETQVEQKKPENNVLTKPFSFAPSDKS 748


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 407 LFKLSRSLLYFTTKLFIGQRITGLLSSIGY 318
           + K+ R+ +   T L +GQ  +G ++ +GY
Sbjct: 198 IIKIGRTHMQDATPLSLGQEFSGYVTQVGY 227


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 556 SRASVSGTSGMGXAQSQSMYDPTC 627
           S+ S+SG SGMG   S +    TC
Sbjct: 4   SKMSMSGMSGMGMGSSSNSSAATC 27


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 290 IGFNWLNPQTSVDTFFVLNSV 228
           +GF+W +P    DTF V  SV
Sbjct: 13  LGFSWASPSALDDTFNVSRSV 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,029
Number of Sequences: 5004
Number of extensions: 54336
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)