Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h08f
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0680 + 5217633-5219072                                           30   1.3  
07_03_0460 + 18425464-18427473                                         29   4.0  
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005...    28   5.3  
10_01_0040 - 467947-468480                                             28   7.0  
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    28   7.0  
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169...    27   9.2  
08_02_0773 + 21043553-21043813,21044775-21045203                       27   9.2  
08_01_0493 - 4297761-4298288                                           27   9.2  

>01_01_0680 + 5217633-5219072
          Length = 479

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 141 IWLLFDLPRHKHAAMCYLANPILPSYEVGYRIEYKES-INRC 263
           ++L  DLP   H A  Y   PI+   E GY++E K S  N C
Sbjct: 370 MYLKEDLPSRLHYADSYRIPPIIGLPEEGYKVEMKRSDKNEC 411


>07_03_0460 + 18425464-18427473
          Length = 669

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +1

Query: 331 ESKPVMRCPIKSLV-VKYNKDLLNLKSIHEIHRVRRQIPYALRG 459
           E +P MR  ++ L+ +K ++D    KSIHE+  VR++I   LRG
Sbjct: 342 EERPEMRLVLEQLLSLKRSRD----KSIHEMLVVRKEIEVFLRG 381


>01_06_0787 -
           31999632-32000045,32000128-32000214,32000295-32000584,
           32000670-32000844,32000930-32001142,32001227-32001328,
           32001418-32001822,32001922-32002134,32002312-32002357,
           32002602-32002867,32003936-32004012,32004095-32004170,
           32004339-32004418,32004945-32005036,32005132-32005171,
           32005301-32005400,32005815-32005962,32006071-32006153,
           32006207-32006383
          Length = 1027

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 493 AIDHGNGKDDGKAEAQSAADSSRASVSGTSGMGXAQSQS 609
           A   G+G ++G  E Q+A +++    S  +G G  QSQS
Sbjct: 302 AASGGDGVEEGDEEVQAAGEAAVEISSENAGPGCRQSQS 340


>10_01_0040 - 467947-468480
          Length = 177

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 535 AQSAADSSRASVSGTSGMGXAQSQSMYDPTC 627
           + S+A++  AS SG+ G G   S   YD TC
Sbjct: 25  SHSSANAWPASSSGSGGGGGGLSAGFYDETC 55


>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
            25457561-25457740,25457823-25458017,25459059-25459157,
            25459508-25460137,25460250-25460591
          Length = 1440

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 448  ALRGRYRGQTQSQYLAIDHGNGKDDGKAEAQSAADSSRASVSGTSGMGXAQSQSM 612
            A R R RG T +     D G+G  +  AEA    D+  +++  + G+  +Q +++
Sbjct: 1330 AKRDRTRGSTSA-----DSGSGSGEANAEATVTNDADSSTIENSRGVDLSQHRAL 1379


>11_03_0226 -
           11908455-11908562,11915971-11916240,11916463-11916946,
           11917148-11918060,11918628-11919300
          Length = 815

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 371 TKLFIGQRITGLLSSIGYTSTYDRFCPIGFNWLNPQTSVDTFFVL 237
           TKL +   + G LS     +   R CP  + W   +   D+F VL
Sbjct: 451 TKLALVHVVAGSLSKERLVAQLQRLCPAKWKWEPVEQGKDSFVVL 495


>08_02_0773 + 21043553-21043813,21044775-21045203
          Length = 229

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 514 FRFHGLWPDTEIGSVPCN 461
           F  HGLWP+ + GS P N
Sbjct: 59  FGIHGLWPNRDDGSYPQN 76


>08_01_0493 - 4297761-4298288
          Length = 175

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 457 GRYRGQTQSQYLAIDHGNGKDDGKAEAQSAADSSRASVSGTS 582
           GRY  + ++ Y    H  G  D   EA  A D S  S+SG +
Sbjct: 46  GRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDLSAISISGAA 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,706
Number of Sequences: 37544
Number of extensions: 336517
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)