Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h08f
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    32   0.29 
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    31   0.51 
Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 505 HGLWPDTEIGSVPCNVLVMRREFDDGL 425
           HGLWP+ E GS P N     R FD+ L
Sbjct: 60  HGLWPNFENGSYPQNCRGTPRHFDENL 86


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 511  GKDDGKAEA-QSAADSSRASVSGTSGMGXAQSQSMYD 618
            G+DDG AEA QS+A ++ +SV+GT  +   + Q++ D
Sbjct: 2894 GEDDGAAEAPQSSAATAASSVAGTEEIEDVERQAVED 2930


>Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical
           protein ZK792.7 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +3

Query: 51  KPTSSRSCFSFCYNHMLLLCIAVYNFS*NFIWLLFDLPRHKHAAMCYLANPILPSYEVGY 230
           + +SSR  F +    ++L  + ++N S ++ WL    P H+    C     +     +GY
Sbjct: 2   RQSSSRRAFIYGIPALVLAFVILWNESWSYWWLSRQWPEHEENGRCDRILIVADPQLIGY 61

Query: 231 RIEYKESINR 260
           + E    I+R
Sbjct: 62  KNEKFGEISR 71


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 181 LCVTWLIQYSQAMKLATELSTKKVSTDVCGFSQ 279
           LC +  I YSQ M   TE + K+V  +V G  Q
Sbjct: 778 LCASLFIHYSQFMPRLTEAAKKRVCRNVWGVQQ 810


>Z66495-13|CAA91278.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 46  LLSQRRAGLASHFA--IIICYFCVLQSTTSHEISSGYYLICR-DTNTQL 183
           ++ +++A  A +    I+ C+FC+L S  +  ++ GY      D NT L
Sbjct: 124 VVHEKKAAAAKYMGDEIVFCFFCILMSAYASGMTLGYMKFSMIDLNTML 172


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
 Frame = +1

Query: 328 DESKPVMRCPIKSLVVKYNKDLLN-LKSIHEIHRVRRQIPYALRGRYRGQTQSQYLAIDH 504
           D    +M   +    V Y  DLL  LKS HE+  VR  IP     R    T+  +   D 
Sbjct: 318 DRFDDLMHFEVDESHVLYKADLLEYLKSAHELREVRVVIPSTFYSRVSRCTEGCFSNPDF 377

Query: 505 GNGKDDGKAEAQSAADSSRASVSGTSGMGXAQSQ 606
              + DG     +    +   +    G     +Q
Sbjct: 378 ACFRADGWCSVPAKLPGAHFEIVANDGHASVVTQ 411


>Z35602-3|CAA84672.1|  722|Caenorhabditis elegans Hypothetical
           protein R13G10.4 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 46  LLSQRRAGLASHFA--IIICYFCVLQSTTSHEISSGYYLICR-DTNTQL 183
           ++ +++A  A +    I+ C+FC+L S  +  ++ GY      D NT L
Sbjct: 124 VVHEKKAAAAKYMGDEIVFCFFCILMSAYASGMTLGYMKFSMIDLNTML 172


>U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical
           protein C25B8.4b protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 434 RRTLCISCMLFKLSRSLLYFTTKLFIGQRITGLLSSIGYTSTYDRFCPIG-FNW 276
           +  LC++  +++ S    Y T   F   ++  L++++G+ ST  RF  +  FNW
Sbjct: 14  KSVLCLTVTIYQSSFEKFYVTKSYFRIFKLVLLVAAVGFVST--RFAQVKLFNW 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,410
Number of Sequences: 27780
Number of extensions: 303224
Number of successful extensions: 882
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)