Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h08f
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.4  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 501 VYGQILRLGLSPVTSS*CVGNLTTDSVYFM 412
           V+  I  + LSPVT++     LT+ S+Y++
Sbjct: 250 VHDGIFGMALSPVTNNLYYSPLTSHSLYYV 279


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 286 PMGQNRSYVEVYPIDESKPVMRCPIKSLVVKYNKD 390
           P+G   S+  +YP+  + P  +  I++L  + + D
Sbjct: 385 PIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPD 419


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 246 LCTQFCSQLHSLGVLD*PSNT*LRVCVAANQI 151
           LCT+F     SLG+    S   L V    NQ+
Sbjct: 499 LCTKFLMHKDSLGLSTATSTCSLAVAKQQNQV 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,411
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)