Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h06f
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 30 0.22
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 30 0.22
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 29 0.51
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.1
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 26 3.6
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 26 4.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.3
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 8.3
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 8.3
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 277 TASGMSFLKSPETASQGDVSKKHPIKAFRESI 182
++ G+ FL SPE A+Q +S+KH A +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 30.3 bits (65), Expect = 0.22
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +3
Query: 237 AVSGDFKKDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 395
A S FK DI E + ++ A HL+ R E ++ KLP+E E F K++P
Sbjct: 106 AYSVVFKDDISEEMLKS------ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 29.1 bits (62), Expect = 0.51
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 108 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLETSPCDAVSGDFKKDIPEAVAE 284
F + + Y ++ND + +ID S+K+F C E + + GD +D A +
Sbjct: 29 FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85
Query: 285 ACGKCTPAQKHLFKRFLEVVK 347
+ HL ++F +V++
Sbjct: 86 VQNEYHQKSNHLREKFAQVLE 106
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 2.1
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Frame = +3
Query: 99 FALFAAVYCKETYS--SENDDLDIEALVGNIDSLKAFIGCFL-----ETSPCDAVSGDFK 257
F+ FA ET S SE + + N D + + FL T C V K
Sbjct: 1244 FSEFAKRVNTETLSLISEWCASSLSLIKANYDEFSSTVDDFLFRFSKATEQCLMVKY-IK 1302
Query: 258 KDIPEAVAEACGKCTPAQK-HLFKRFLEVVKDKLPQEYEAFKTKY 389
KD+ + E+C ++ HL+K+F +V+ L E T++
Sbjct: 1303 KDLEIEIEESCDFSIQTEEIHLYKKFKDVISSNLEFIVEIKNTRW 1347
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 108 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 218
F Y K+ SS N DL ++ G + AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 72 KMKGFYVLCFALFAAVYCKETYS 140
++ G ++LC L A V CKE +S
Sbjct: 580 RLSGHFLLCAKLGAKVRCKELFS 602
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 333 LEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVANS*GNQFLIFPAVLNL 482
LE +KD +P ++K + GK FD L V + GN ++ VLNL
Sbjct: 2628 LEYIKDSVP------RSKRNT-GKMFDDSLELVPENLGNDLKVYFEVLNL 2670
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 220 KHPLATLFPGISKRTFLKLWQKHVANVLQPRNIYSNVSLKSS--RTSYLKNTK 372
KHP G+S RT L ++ K+ AN + ++ + S+ SS +S KN+K
Sbjct: 513 KHPSLAKHSGVSLRTGLLIYPKY-ANGSKRKDGFGATSIISSGEHSSLPKNSK 564
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 234 DAVSGDFKKDIPEAVAEACG 293
+++S D D E+VAEACG
Sbjct: 103 NSISSDVPFDYSESVAEACG 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,962
Number of Sequences: 5004
Number of extensions: 48972
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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