Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h06f
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0068 + 488943-490457                                             29   2.8  
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509...    28   6.5  
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888...    28   6.5  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    27   8.5  

>02_01_0068 + 488943-490457
          Length = 504

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 202 LLDAS*KHPLATLFPGISKRTFLKLWQKHVA 294
           +L A    P+ + FP I+KR F   W  HVA
Sbjct: 214 MLRAFTSFPVFSFFPAITKRLFRNQWAAHVA 244


>05_04_0176 +
           18749945-18749969,18750186-18750751,18750876-18750944,
           18752128-18752325,18752791-18752922,18753658-18753744,
           18753845-18754288,18754644-18754811,18755129-18755359,
           18755893-18756008,18756125-18756407
          Length = 772

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 265 FLKLWQKHVANVLQPRNIYSNVSLKSSRTSYLKNTKPSKLNT 390
           +++ W+K V  VL   ++Y N +     T+++K      LNT
Sbjct: 336 YVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNT 377


>04_02_0031 +
           8874025-8874180,8882152-8882550,8882651-8882987,
           8883234-8884060
          Length = 572

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/72 (20%), Positives = 35/72 (48%)
 Frame = -1

Query: 250 SPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*TAANSAKHST*KPFIL 71
           SPE   Q +    H I     ++F  +A   R + S+   + +    N +   + +PFI+
Sbjct: 137 SPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEVNPSLPPSFEPFIM 196

Query: 70  NYSLQLIRKIIL 35
           N++++ + + ++
Sbjct: 197 NFNMKNLNRTLI 208


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 24/68 (35%), Positives = 32/68 (47%)
 Frame = -1

Query: 295 LPHASATASGMSFLKSPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*T 116
           L  A A A  MS    P+T   G +S   P+     S  PT +S S SS S L VS    
Sbjct: 13  LSDAFAAAVLMSSTDKPDTLPPGRLSPVSPLTHSSSSKLPTPSSSSGSSGS-LSVSRAPA 71

Query: 115 AANSAKHS 92
           +A +++ S
Sbjct: 72  SALASRRS 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,778
Number of Sequences: 37544
Number of extensions: 290586
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)