Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h06f
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83319-3|CAB05905.1|   74|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    29   3.3  

>Z83319-3|CAB05905.1|   74|Caenorhabditis elegans Hypothetical
           protein T02D1.7 protein.
          Length = 74

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 75  MKGFYVLCFALFAAVYCKETYSSENDDLDIEALVGNIDSLKAFIG 209
           M+  ++L  ++ + ++     +  +D  DIEAL+G  D + AF+G
Sbjct: 1   MQFLHILLLSILSLIFISSVQAVPSDQ-DIEALMGLQDQVNAFLG 44


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 258 KDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVA 434
           K + + + E   K    +K +  +   + K  L +  E +K KYD   +H+D + S+VA
Sbjct: 141 KKVRQNLLERQRKLQVNKKQVDDKIQALEKAALKKNDELYKEKYDEITRHYDRIRSSVA 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,958,341
Number of Sequences: 27780
Number of extensions: 266285
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)