Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h03f
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...   239   1e-63
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...   237   4e-63
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...   237   5e-63
06_03_0290 - 19193707-19193752,19193822-19194090                       28   5.0  
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236...    28   6.6  
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397...    28   6.6  

>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score =  239 bits (585), Expect = 1e-63
 Identities = 112/173 (64%), Positives = 141/173 (81%)
 Frame = +3

Query: 84  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 263
           VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 264 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 443
           +++RK RL AE VQG+NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79  QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138

Query: 444 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPD 602
           CIGFT +     ++TCYAQ +Q+R IR+KM EI+    ++ +L+E+V+K IP+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPE 191


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score =  237 bits (581), Expect = 4e-63
 Identities = 112/173 (64%), Positives = 140/173 (80%)
 Frame = +3

Query: 84  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 263
           VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 264 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 443
           +++RK RL AE VQGRNVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79  QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138

Query: 444 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPD 602
           CIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  +L+E+V+K IP+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPE 191


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score =  237 bits (580), Expect = 5e-63
 Identities = 112/173 (64%), Positives = 140/173 (80%)
 Frame = +3

Query: 84  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 263
           VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 264 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 443
           +++RK RL AE VQG+NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79  QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138

Query: 444 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPD 602
           CIGFT +     ++TCYAQ +Q+R IR+KM EI+    ++ +L+E+V+K IP+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPE 191


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 319 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 408
           +A S A T  P  S GW+  G  S+ P+L+
Sbjct: 67  AAGSAARTRSPSQSNGWITGGSASAMPSLV 96


>04_03_0983 +
           21423086-21423280,21423330-21423404,21423531-21423632,
           21423721-21423774,21423880-21423972,21424526-21424618,
           21427329-21427433,21427517-21427615,21427701-21427997,
           21428512-21428622
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 361 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 218
           +++  +R+ PW L++  R  T +A  +  +KD SA   + +S  E  K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321


>03_05_0791 +
           27736978-27737217,27737648-27739191,27739512-27739763,
           27739844-27739954,27740042-27740102,27740373-27740558
          Length = 797

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 227 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 135
           +FENS LQSF     +L +  K+G   P  E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,046
Number of Sequences: 37544
Number of extensions: 349556
Number of successful extensions: 944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)