Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h02r
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 30 0.44
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 28 1.3
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 3.1
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 7.2
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 7.2
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 7.2
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 7.2
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 25 9.5
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 9.5
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 314 IICSNSSRTNLTYSDIYK 261
+ICS SS TN T+S++YK
Sbjct: 542 VICSVSSHTNFTFSNVYK 559
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 358 LVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITVLSVFALVSLI 200
L+P + G + P S + ++ + TL++++D+W W + L + LVS I
Sbjct: 128 LIPLSNG--MDDTPKSHLKVKILKVQETLSNSNDSWLWQRFSSLLLNCLVSSI 178
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 448 NLLNYIVFLRVTPFLPNWFI 389
N+LN++ LR+ PF P FI
Sbjct: 305 NILNHMTRLRIVPFAPGHFI 324
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 628 SILSGFLFPFYFALVLVCCCSAIGASLCFFLSNL 527
SI F+FPFY+ L+++ + IG S C S L
Sbjct: 10 SIFQFFVFPFYYFLLII---TEIGFSSCIQYSGL 40
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 540 SCQIFLERSLLENSSQKEQQSG 475
SC +F E+S +EN KE+ +G
Sbjct: 984 SCLVFQEKSEVENQRMKEELAG 1005
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 268 MSEYV---RFVLLELLQMMVEPHQ*MFLMQTAPKAPQSLEQTYL*TS 399
+S YV + VL L+Q ++P ++ T P+ S+EQT L +S
Sbjct: 479 LSRYVPTLKVVLENLIQDKLDPELFPYVRNTTPQTEVSMEQTSLRSS 525
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 709 YFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPF 599
YFY V+ + +V + +F+I ++FL+ +G L PF
Sbjct: 183 YFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDPF 219
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 498 KNFLTSFFPRRFDKKKHRLAPIAEQQQTNTSAK*KGKR 611
K +LT F R+ +++KH + +Q++ A K R
Sbjct: 35 KEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLR 72
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 50 FHWPYRLILLIITLMTKPNQHFVECKAWQYI-NKINILVK 166
F WP+ L + +LM K +HF E + Y +IN L+K
Sbjct: 207 FLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIK 246
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 796 EHERQHLHLPWDLEDANQXGLVLDRYKDRYFYEV 695
+HE LH+ D GL RY D YFY +
Sbjct: 1132 KHENGDLHI----SDLRNTGLFPLRYGDNYFYNI 1161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,967
Number of Sequences: 5004
Number of extensions: 64875
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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