Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h02r
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0989 - 29948834-29948995,29949083-29949253,29949369-299496... 177 1e-44
02_05_0383 - 28497525-28497689,28497776-28497946,28498115-284983... 170 1e-42
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 155 4e-38
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275... 60 2e-09
01_06_1012 - 33806190-33807875,33807963-33808331 33 0.20
11_01_0239 - 1842576-1842741,1843264-1843379,1843667-1843738,184... 29 3.3
01_06_1720 + 39421381-39421444,39422424-39422601,39422812-394229... 29 5.7
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776... 28 7.5
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448... 28 9.9
>04_04_0989 -
29948834-29948995,29949083-29949253,29949369-29949639,
29950459-29950533,29950706-29950866
Length = 279
Score = 177 bits (430), Expect = 1e-44
Identities = 91/197 (46%), Positives = 127/197 (64%), Gaps = 1/197 (0%)
Frame = -2
Query: 754 DANQXGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVC 575
D + G L+ Y Y +VL G VYIF+QTF IPG+IF+S+L+G LF + LV
Sbjct: 74 DGSTGGGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRGVALVV 133
Query: 574 CCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNW 395
++ GAS CFFLS L+GK LV +P++ + K VAK ++ LLNY++FLRVTP LPN
Sbjct: 134 FAASAGASSCFFLSKLIGKPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLPNT 193
Query: 394 FINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITVLSVFA 215
FIN+++P++ VP F L T IG+ P S+V ++AG L LTS SD + SI +L +
Sbjct: 194 FINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALGELTSLSDLYDTQSIALLFLIG 253
Query: 214 LVSLIPVFL-KDKLREK 167
+VS+ P L KD+ +EK
Sbjct: 254 IVSVTPTLLGKDEAQEK 270
>02_05_0383 -
28497525-28497689,28497776-28497946,28498115-28498385,
28499576-28499736
Length = 255
Score = 170 bits (413), Expect = 1e-42
Identities = 87/197 (44%), Positives = 125/197 (63%)
Frame = -2
Query: 778 LHLPWDLEDANQXGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPF 599
L LP +L++ L+ Y Y +VL G VYIF+QTF IPG+IF+S+L+G LF
Sbjct: 41 LKLPKNLQELQILTDHLEDYTSDYTVQVLVGYCAVYIFMQTFMIPGTIFMSLLAGALFGQ 100
Query: 598 YFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLR 419
+ LV + GAS C+FLS L+GK LV +P++ + K VAK ++ LLNY++FLR
Sbjct: 101 LGGVALVVFAATAGASSCYFLSKLIGKPLVFSLWPDKLGFFQKQVAKRREKLLNYMLFLR 160
Query: 418 VTPFLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTS 239
VTP LPN FIN+++P++ VP F L TFIG+ P ++V ++AG L L+S SD + S
Sbjct: 161 VTPTLPNTFINLASPIVDVPYHIFFLATFIGLIPAAYVTVRAGIALGDLSSLSDLYDKQS 220
Query: 238 ITVLSVFALVSLIPVFL 188
I +L + +VS+ P L
Sbjct: 221 IALLFLIGVVSVTPTLL 237
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 155 bits (376), Expect = 4e-38
Identities = 77/202 (38%), Positives = 118/202 (58%)
Frame = -2
Query: 784 QHLHLPWDLEDANQXGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLF 605
Q L LP L D L Y Y + G +YIF+QTF IPG+IF+S+L+G LF
Sbjct: 72 QILRLPRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALF 131
Query: 604 PFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVF 425
+LV + GAS C+F+S L+G+ L+ +PE+ + +AK K+ LLNY++F
Sbjct: 132 GVVKGGILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAKRKEKLLNYMLF 191
Query: 424 LRVTPFLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSW 245
LR+TP LPN FINM++P++ +P F T IG+ P S++ ++AG+ L L S + +
Sbjct: 192 LRITPTLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALGDLRSLRELYDS 251
Query: 244 TSITVLSVFALVSLIPVFLKDK 179
++ +L + V++ P LK K
Sbjct: 252 KTLVILFLIGTVAVAPTILKRK 273
>07_03_1534 +
27526170-27526265,27527030-27527091,27527488-27527542,
27528168-27528266,27528346-27528432,27528951-27529067,
27529479-27529571,27529915-27529945,27530188-27530357
Length = 269
Score = 60.5 bits (140), Expect = 2e-09
Identities = 40/149 (26%), Positives = 67/149 (44%)
Frame = -2
Query: 679 LVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 500
L Y+ L A+P SI L++ G+LF V + IGA+ F L +G+ V
Sbjct: 55 LAYVPLTVLAVPASI-LTLGGGYLFGLPVGFVADSIGATIGATAAFLLGRTIGRPYVLSK 113
Query: 499 FPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGVPLVPFALGTFIGVA 320
+ + A+A + ++ LR+ P LP +N V V + + L +++G+
Sbjct: 114 CKDYPKFQAVAIAIERSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVGIGEYMLASWLGMM 172
Query: 319 PPSFVAIQAGQTLHTLTSTSDAWSWTSIT 233
P + + G TL L+ + WS S T
Sbjct: 173 PITLALVYVGTTLKDLSDVTHGWSEISTT 201
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 33.5 bits (73), Expect = 0.20
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -2
Query: 676 VYIFLQTFAIPGSIFLSILS-GFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 500
V IF+ G++ L + + G + Y+ + C+ C LS+LL K ++ F
Sbjct: 329 VDIFITNLLFGGALCLEVYAIGMMLISYWTYAALQGCN------CRTLSHLLFKS-IKYF 381
Query: 499 FPERAAEWSKAVAKHKDNLLNYIVFLRVT 413
PE +WS +A+H NL++Y + R T
Sbjct: 382 RPESRPKWSNLMAQH--NLISYCLHDRAT 408
>11_01_0239 -
1842576-1842741,1843264-1843379,1843667-1843738,
1844057-1844143,1844479-1844582,1845250-1845307,
1845582-1845630,1846252-1846577,1846645-1846785
Length = 372
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 104 NQHFVECKAWQYINKINILVKLFSK 178
+ H VE + WQY+N + L ++FSK
Sbjct: 346 HHHLVEKERWQYMNWLKTLEEMFSK 370
>01_06_1720 +
39421381-39421444,39422424-39422601,39422812-39422980,
39423101-39423170,39423259-39423487,39425130-39425340
Length = 306
Score = 28.7 bits (61), Expect = 5.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 293 CLNCYK*WWSHTNKCS*CK 349
C+NCY+ W++ + C C+
Sbjct: 230 CINCYRDWYTRSQSCPFCR 248
>06_02_0133 +
12176059-12176238,12177244-12177362,12177515-12177612,
12177811-12177870,12177920-12177990,12178082-12178276,
12178395-12178441,12178532-12178598,12178660-12178665,
12178689-12178789,12179014-12179115,12179182-12179323,
12179578-12179661,12179760-12180080
Length = 530
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 253 WSWTSITVLSVFALVSLIPVFLKDKLREK---FD*DIYFIYVLPCFTFH 116
W SIT L + +V I L + + FD ++FIYVLP F+
Sbjct: 50 WVNESITALLIGCVVGAIIFLLSEGKNSRILRFDEQLFFIYVLPPIIFN 98
>08_01_0514 +
4481383-4481903,4482532-4484590,4485038-4485107,
4485434-4485660,4486238-4486324,4486408-4487114,
4487206-4487270,4487323-4487837,4487898-4487991,
4488116-4488398,4488494-4488689,4488913-4489254
Length = 1721
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 679 LVYIFLQTF-AIPGSIFLSILSGFLFPFYFALVLVCC 572
L+++ L+TF G IF+ GF YF LV++ C
Sbjct: 713 LIFLKLKTFYGTDGRIFIPGYKGFRCLKYFGLVMISC 749
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,388,871
Number of Sequences: 37544
Number of extensions: 376389
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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