Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h02r
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-6|CAA87776.1| 246|Caenorhabditis elegans Hypothetical pr... 267 5e-72
Z77669-3|CAB01241.2| 259|Caenorhabditis elegans Hypothetical pr... 130 1e-30
AL023853-2|CAA19559.3| 253|Caenorhabditis elegans Hypothetical ... 126 1e-29
Z82276-4|CAB05241.3| 327|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006664-1|AAF39902.2| 298|Caenorhabditis elegans Serpentine re... 29 2.9
AF024492-5|AAF98621.1| 334|Caenorhabditis elegans Serpentine re... 29 3.9
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 6.8
U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal mem... 28 6.8
U23177-3|AAA64333.2| 316|Caenorhabditis elegans Lethal protein ... 28 6.8
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 6.8
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 6.8
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 28 8.9
>Z47808-6|CAA87776.1| 246|Caenorhabditis elegans Hypothetical
protein D2013.10 protein.
Length = 246
Score = 267 bits (655), Expect = 5e-72
Identities = 120/206 (58%), Positives = 159/206 (77%)
Frame = -2
Query: 790 ERQHLHLPWDLEDANQXGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGF 611
E+ HL P +LEDA Q G VL +YK+ + VL GV +VY+FLQ+FAIPGSIFL+ILSG+
Sbjct: 39 EKVHLKYPRNLEDAKQLGRVLSKYKENNYSVVLCGVIVVYVFLQSFAIPGSIFLTILSGY 98
Query: 610 LFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYI 431
LFPFY A+VLVC CSA GA++C+ +S L G+ V + FPER A+W ++KH+D+ LNY+
Sbjct: 99 LFPFYVAIVLVCSCSATGAAICYTISKLFGRSFVLQKFPERIAKWQDDLSKHRDDFLNYM 158
Query: 430 VFLRVTPFLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAW 251
+FLRVTP +PNW IN+++PV+ VPL PF GTF+GVAPPSF+ IQAG TL L+ TS AW
Sbjct: 159 IFLRVTPIVPNWLINIASPVLDVPLAPFFWGTFLGVAPPSFLYIQAGSTLEQLSHTSVAW 218
Query: 250 SWTSITVLSVFALVSLIPVFLKDKLR 173
SW+SI +L+ A++SL P+ LK KL+
Sbjct: 219 SWSSIVLLTGSAILSLAPILLKKKLK 244
>Z77669-3|CAB01241.2| 259|Caenorhabditis elegans Hypothetical
protein T07F10.4a protein.
Length = 259
Score = 130 bits (314), Expect = 1e-30
Identities = 56/173 (32%), Positives = 101/173 (58%)
Frame = -2
Query: 721 YKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCF 542
YK+ +F + Y++ QTFAIPGS L++++G ++ + +L CC + +G++LC+
Sbjct: 55 YKEDHFGYITTLFICAYLYKQTFAIPGSFLLNVIAGVVYDLWSGFILCCCLTTLGSTLCY 114
Query: 541 FLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGV 362
S L G++ V +F ++ + + + + LL +++F R+ P P+W +N+ AP + +
Sbjct: 115 MFSELFGREYVFYYFGQKLTYLQQKIDDNSNRLLPFLLFARMFPISPSWLLNIVAPFLNI 174
Query: 361 PLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITVLSVFALVSL 203
PL F + G+AP +F+ +QAG L L S D +S T++ L FAL+ L
Sbjct: 175 PLPIFVVSALFGLAPYNFICVQAGYILRDLRSWDDVFSTTTMLKLFSFALIPL 227
>AL023853-2|CAA19559.3| 253|Caenorhabditis elegans Hypothetical
protein Y71A12C.2 protein.
Length = 253
Score = 126 bits (305), Expect = 1e-29
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 1/207 (0%)
Frame = -2
Query: 784 QHLHLPWDLEDANQXGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLF 605
Q P DLE + L +Y++ + + Y++ QTFAIPGS F+++L+G LF
Sbjct: 32 QRPRFPRDLEGLRELSSSLTKYEESHAAYTVLLFSAAYLYKQTFAIPGSFFMNLLAGALF 91
Query: 604 PFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVF 425
+ LVC +A+GASLCF LS L +V +F R V +D L +++
Sbjct: 92 GTVRGVALVCSLNAVGASLCFCLSALFAAPIVDRFLKSRIESLRCLVNAERDRLWFFLLS 151
Query: 424 LRVTPFLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWS- 248
R+ PF P+W +N+S+P + VPL A F+G+ P + + ++AG L + S SD +
Sbjct: 152 ARIFPFTPHWLLNISSPFLDVPLRYHASSVFVGLFPYNLLCVRAGTVLAEVNSMSDVFDV 211
Query: 247 WTSITVLSVFALVSLIPVFLKDKLREK 167
WT + SV L+ + K EK
Sbjct: 212 WTLSELFSVSLLLLVATRIAKQNSLEK 238
>Z82276-4|CAB05241.3| 327|Caenorhabditis elegans Hypothetical
protein K03D3.4 protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.9
Identities = 39/133 (29%), Positives = 58/133 (43%)
Frame = -2
Query: 697 VLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGK 518
VLFG+F+ L T A I++S++ +FP V + I A + L +LL
Sbjct: 78 VLFGIFV----LCTLAEGLLIYISLI---IFPIGIVYVFI---EMIIADVFHLLISLLA- 126
Query: 517 KLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGVPLVPFALG 338
+ KFF W K V + + YIVF+ +L M + VIG L P+
Sbjct: 127 --MEKFFIYFFPRWEKTVISIQKYIHKYIVFV----YLACCSRYMLSAVIGSSLEPYG-W 179
Query: 337 TFIGVAPPSFVAI 299
F+G F+ I
Sbjct: 180 KFLGPIVQHFLTI 192
>AC006664-1|AAF39902.2| 298|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 40 protein.
Length = 298
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 434 IIEQIVLVFCHCL*PLCCSFWEEF 505
I++ +V FC + P C S W EF
Sbjct: 212 ILDAVVTFFCQFIPPFCVSIWPEF 235
>AF024492-5|AAF98621.1| 334|Caenorhabditis elegans Serpentine
receptor, class h protein129 protein.
Length = 334
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -2
Query: 709 YFYEVLFGVFLVYIFLQ--TFAIPGSIFLSILSGFLFP-FYFALVLVCCCSAIGASLCFF 539
+F+ L + + ++ + F +PG I L +LS P F A LV C + G S+ F
Sbjct: 56 HFWSSLLDITVCFLVIPYTIFPVPGGIPLGVLSIMSVPSFIQAFSLVVCGAFTGISILGF 115
Query: 538 LSN 530
N
Sbjct: 116 FKN 118
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/45 (42%), Positives = 19/45 (42%)
Frame = +3
Query: 279 CKVCPA*IATNDGGATPINVPNANGTKGTPITGADIFINQLGKKG 413
CK CPA A G A P ANG G P G D G KG
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP--GQDGQPGAPGNKG 187
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 279 CKVCPA*IATNDGGATPINVPNANGTKGTP 368
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 279 CKVCPA*IATNDGGATPINVPNANGTKGTP 368
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
>U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 2 protein.
Length = 661
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 394 FINMSAPVIGVPLVPFALGTFIGVAPPSFV 305
+ N+S P++ V L F LGT +G + PS +
Sbjct: 207 YSNLSKPILDVFLYLFRLGTSLGFSSPSIL 236
>U23177-3|AAA64333.2| 316|Caenorhabditis elegans Lethal protein 767
protein.
Length = 316
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 304 AIQAGQTLHTLTSTSDAWSWTSITVLSVFALVSLIPVFLKDKL 176
A+ A L+T+ +TSD + IT L+ LIP F++DK+
Sbjct: 253 AVFAKSALNTVGNTSDTTGY--ITHQLQLELMDLIPTFIRDKI 293
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 279 CKVCPA*IATNDGGATPINVPNANGTKGTP 368
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 279 CKVCPA*IATNDGGATPINVPNANGTKGTP 368
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -2
Query: 418 VTPFLPNWFINMSAPVIGVPLV--PFALGTFIGV 323
++PF+ + FI +PV+ PLV PFAL FIG+
Sbjct: 734 LSPFILSPFI--LSPVVMAPLVLSPFALSPFIGI 765
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,706
Number of Sequences: 27780
Number of extensions: 366654
Number of successful extensions: 1184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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