Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h02f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   2.2  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   3.9  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   5.2  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   5.2  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   9.0  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   9.0  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.0  

>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 492 SILSGFLFPFYFALVLVCCCSAIGASLCFFLSNL 593
           SI   F+FPFY+ L+++   + IG S C   S L
Sbjct: 10  SIFQFFVFPFYYFLLII---TEIGFSSCIQYSGL 40


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 360 LEDAKQLGLVLDRYKDRYFYEVLFGVFL-VYIFLQTFAIPGSIFLSILSGFLFPFYFALV 536
           + D  Q+ L+   +   ++  +   V L   +FL+   + GS+++   S ++   +++L 
Sbjct: 286 IADIPQITLIFISFLFSFYVLIFIWVRLFARLFLRGSTLVGSVWVLPRSSWVLASFYSLH 345

Query: 537 LVCCCSAIGASLCFFLSNLLGK 602
            +  C+   A  C  +S+++ +
Sbjct: 346 FLWLCTFFHALQCAIISSIVSQ 367


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 411 YFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPF 521
           YFY V+  + +V +   +F+I  ++FL+  +G L PF
Sbjct: 183 YFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDPF 219


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 622 KNFLTSFFPRRFDKKKHRLAPIAEQQQTNTSAK*KGKR 509
           K +LT F  R+ +++KH    + +Q++    A  K  R
Sbjct: 35  KEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLR 72


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +3

Query: 552 SAIGASLCFFLSNLLGKKL 608
           SAIGASLCF  S   GKK+
Sbjct: 317 SAIGASLCFNASK-FGKKI 334


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 616 FLTSFFPRRFDKKKHRLAPIAEQQQTNTS 530
           F T+F   R  ++++R+AP AE ++ +TS
Sbjct: 468 FRTAFTRSREWRRRYRVAPPAENEKPHTS 496


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 216 MFSHFLFPCLVLTKLFSNEK 157
           +F H+  PC+VL  + S+EK
Sbjct: 328 LFGHYGIPCIVLNLVKSSEK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,136
Number of Sequences: 5004
Number of extensions: 36146
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)