Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h02f
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0989 - 29948834-29948995,29949083-29949253,29949369-299496...    79   2e-15
02_05_0383 - 28497525-28497689,28497776-28497946,28498115-284983...    79   2e-15
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958...    71   1e-12
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275...    33   0.25 
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    28   7.0  
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    27   9.3  

>04_04_0989 -
           29948834-29948995,29949083-29949253,29949369-29949639,
           29950459-29950533,29950706-29950866
          Length = 279

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 39/80 (48%), Positives = 52/80 (65%)
 Frame = +3

Query: 390 LDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGAS 569
           L+ Y   Y  +VL G   VYIF+QTF IPG+IF+S+L+G LF     + LV   ++ GAS
Sbjct: 82  LENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRGVALVVFAASAGAS 141

Query: 570 LCFFLSNLLGKKLVRKFFPE 629
            CFFLS L+GK LV   +P+
Sbjct: 142 SCFFLSKLIGKPLVFSLWPD 161


>02_05_0383 -
           28497525-28497689,28497776-28497946,28498115-28498385,
           28499576-28499736
          Length = 255

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 41/93 (44%), Positives = 58/93 (62%)
 Frame = +3

Query: 351 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 530
           P +L++ + L   L+ Y   Y  +VL G   VYIF+QTF IPG+IF+S+L+G LF     
Sbjct: 44  PKNLQELQILTDHLEDYTSDYTVQVLVGYCAVYIFMQTFMIPGTIFMSLLAGALFGQLGG 103

Query: 531 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPE 629
           + LV   +  GAS C+FLS L+GK LV   +P+
Sbjct: 104 VALVVFAATAGASSCYFLSKLIGKPLVFSLWPD 136


>03_05_0838 +
           28093752-28094011,28095238-28095508,28095640-28095810,
           28096238-28096369
          Length = 277

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 37/93 (39%), Positives = 53/93 (56%)
 Frame = +3

Query: 351 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 530
           P  L D + L   L  Y   Y    + G   +YIF+QTF IPG+IF+S+L+G LF     
Sbjct: 77  PRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKG 136

Query: 531 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPE 629
            +LV   +  GAS C+F+S L+G+ L+   +PE
Sbjct: 137 GILVVFTATAGASSCYFVSKLIGRPLISWLWPE 169


>07_03_1534 +
           27526170-27526265,27527030-27527091,27527488-27527542,
           27528168-27528266,27528346-27528432,27528951-27529067,
           27529479-27529571,27529915-27529945,27530188-27530357
          Length = 269

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 441 LVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLV 611
           L Y+ L   A+P SI L++  G+LF      V     + IGA+  F L   +G+  V
Sbjct: 55  LAYVPLTVLAVPASI-LTLGGGYLFGLPVGFVADSIGATIGATAAFLLGRTIGRPYV 110


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 LVYIFLQTF-AIPGSIFLSILSGFLFPFYFALVLVCC 548
           L+++ L+TF    G IF+    GF    YF LV++ C
Sbjct: 713 LIFLKLKTFYGTDGRIFIPGYKGFRCLKYFGLVMISC 749


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 456 LQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGAS 569
           L T AI G +  + L  FLF     LV  CCCS  G S
Sbjct: 363 LSTGAIAGIVVGNAL--FLFAMLSLLVASCCCSTGGES 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,024,594
Number of Sequences: 37544
Number of extensions: 183414
Number of successful extensions: 410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)