Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h02f
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-6|CAA87776.1|  246|Caenorhabditis elegans Hypothetical pr...   130   8e-31
AL023853-2|CAA19559.3|  253|Caenorhabditis elegans Hypothetical ...    73   1e-13
Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical pr...    66   3e-11
Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical pr...    32   0.39 
AF024492-5|AAF98621.1|  334|Caenorhabditis elegans Serpentine re...    29   2.7  
U61945-5|AAB03128.1|  517|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z47808-6|CAA87776.1|  246|Caenorhabditis elegans Hypothetical
           protein D2013.10 protein.
          Length = 246

 Score =  130 bits (314), Expect = 8e-31
 Identities = 61/110 (55%), Positives = 77/110 (70%)
 Frame = +3

Query: 300 YRQFPXXXXXXXXXXXXPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPG 479
           Y  FP            P +LEDAKQLG VL +YK+  +  VL GV +VY+FLQ+FAIPG
Sbjct: 29  YSNFPEVSADEKVHLKYPRNLEDAKQLGRVLSKYKENNYSVVLCGVIVVYVFLQSFAIPG 88

Query: 480 SIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPE 629
           SIFL+ILSG+LFPFY A+VLVC CSA GA++C+ +S L G+  V + FPE
Sbjct: 89  SIFLTILSGYLFPFYVAIVLVCSCSATGAAICYTISKLFGRSFVLQKFPE 138


>AL023853-2|CAA19559.3|  253|Caenorhabditis elegans Hypothetical
           protein Y71A12C.2 protein.
          Length = 253

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/90 (40%), Positives = 54/90 (60%)
 Frame = +3

Query: 351 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 530
           P DLE  ++L   L +Y++ +    +      Y++ QTFAIPGS F+++L+G LF     
Sbjct: 37  PRDLEGLRELSSSLTKYEESHAAYTVLLFSAAYLYKQTFAIPGSFFMNLLAGALFGTVRG 96

Query: 531 LVLVCCCSAIGASLCFFLSNLLGKKLVRKF 620
           + LVC  +A+GASLCF LS L    +V +F
Sbjct: 97  VALVCSLNAVGASLCFCLSALFAAPIVDRF 126


>Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical
           protein T07F10.4a protein.
          Length = 259

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 25/75 (33%), Positives = 46/75 (61%)
 Frame = +3

Query: 399 YKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCF 578
           YK+ +F  +       Y++ QTFAIPGS  L++++G ++  +   +L CC + +G++LC+
Sbjct: 55  YKEDHFGYITTLFICAYLYKQTFAIPGSFLLNVIAGVVYDLWSGFILCCCLTTLGSTLCY 114

Query: 579 FLSNLLGKKLVRKFF 623
             S L G++ V  +F
Sbjct: 115 MFSELFGREYVFYYF 129


>Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical
           protein M117.6 protein.
          Length = 124

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 173 YFLMKSNFINI*NILLHVSSLCKHINYELLFNFAVCCS 60
           +FL KS FI I N+ + +++  +   Y+    ++ CCS
Sbjct: 39  FFLAKSTFILIFNVFMKLNNCFQVFRYQRFLQYSTCCS 76


>AF024492-5|AAF98621.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein129 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 411 YFYEVLFGVFLVYIFLQ--TFAIPGSIFLSILSGFLFP-FYFALVLVCCCSAIGASLCFF 581
           +F+  L  + + ++ +    F +PG I L +LS    P F  A  LV C +  G S+  F
Sbjct: 56  HFWSSLLDITVCFLVIPYTIFPVPGGIPLGVLSIMSVPSFIQAFSLVVCGAFTGISILGF 115

Query: 582 LSN 590
             N
Sbjct: 116 FKN 118


>U61945-5|AAB03128.1|  517|Caenorhabditis elegans Hypothetical
           protein C49C8.1 protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 595 RRFDKKKHRLAPIAEQQQTNTS-AK*KGKRNPESILKNIDPG 473
           R+F KK+  LAPI  ++++  S +K    + P +  K++ PG
Sbjct: 178 RKFVKKEKNLAPIVTKKESKISKSKTLPSKGPSTKSKDLKPG 219


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 423 VLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA-LVLVCCCSAIGASLCFFLS 587
           V+F V++ +++      P  + L++      PF  A L  +CC  AI  S+ F  S
Sbjct: 69  VVFSVYMGFVYQPYIVFPYHLLLTVGFFRFGPFVTAHLFNICCTLAILCSMSFLYS 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,078
Number of Sequences: 27780
Number of extensions: 194571
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)