Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12h01r
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 159 2e-39
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 159 2e-39
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 81 1e-15
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 81 1e-15
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 73 2e-13
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 73 2e-13
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 69 3e-12
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 68 8e-12
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 67 1e-11
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 64 8e-11
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 62 3e-10
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 59 3e-09
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 58 5e-09
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 58 7e-09
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 48 7e-06
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 48 7e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 2e-05
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 44 2e-04
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 35 0.055
AC006675-1|AAK84559.1| 334|Caenorhabditis elegans Serpentine re... 31 0.67
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 6.3
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 159 bits (386), Expect = 2e-39
Identities = 66/83 (79%), Positives = 76/83 (91%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 579
F D+PS+PPKCKFEPPL HPNVYPSGTVCLSLLDE KDW+P+I+IKQ+L+GIQDLLN P
Sbjct: 64 FKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHP 123
Query: 578 NVKDPAQAEAYTIYCQNRLEYDK 510
N++DPAQAEAY IYCQNR EY+K
Sbjct: 124 NIEDPAQAEAYQIYCQNRAEYEK 146
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 159 bits (386), Expect = 2e-39
Identities = 66/83 (79%), Positives = 76/83 (91%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 579
F D+PS+PPKCKFEPPL HPNVYPSGTVCLSLLDE KDW+P+I+IKQ+L+GIQDLLN P
Sbjct: 64 FKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHP 123
Query: 578 NVKDPAQAEAYTIYCQNRLEYDK 510
N++DPAQAEAY IYCQNR EY+K
Sbjct: 124 NIEDPAQAEAYQIYCQNRAEYEK 146
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/83 (43%), Positives = 48/83 (57%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 579
F +YP+ PP KF + HPNVY G++CL +L W P + IL IQ LL+EP
Sbjct: 59 FTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNR--WSPTYDVAAILTSIQSLLDEP 116
Query: 578 NVKDPAQAEAYTIYCQNRLEYDK 510
N PA + A +Y +NR EY+K
Sbjct: 117 NPNSPANSLAAQLYQENRREYEK 139
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/83 (43%), Positives = 48/83 (57%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 579
F +YP+ PP KF + HPNVY G++CL +L W P + IL IQ LL+EP
Sbjct: 59 FTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNR--WSPTYDVAAILTSIQSLLDEP 116
Query: 578 NVKDPAQAEAYTIYCQNRLEYDK 510
N PA + A +Y +NR EY+K
Sbjct: 117 NPNSPANSLAAQLYQENRREYEK 139
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/83 (40%), Positives = 47/83 (56%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 579
F DYP PPK F + HPN+ +G++CL +L W PA+TI ++LL I LL +P
Sbjct: 56 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL--RSQWSPALTISKVLLSICSLLCDP 113
Query: 578 NVKDPAQAEAYTIYCQNRLEYDK 510
N DP E IY +R Y++
Sbjct: 114 NPDDPLVPEIARIYKTDRERYNQ 136
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/83 (40%), Positives = 47/83 (56%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 579
F DYP PPK F + HPN+ +G++CL +L W PA+TI ++LL I LL +P
Sbjct: 56 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL--RSQWSPALTISKVLLSICSLLCDP 113
Query: 578 NVKDPAQAEAYTIYCQNRLEYDK 510
N DP E IY +R Y++
Sbjct: 114 NPDDPLVPEIARIYKTDRERYNQ 136
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKD-----------WRPAITIKQI 612
F DYP SPPK +F + HPN+Y G VC+S+L D W P +I++I
Sbjct: 60 FPQDYPLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKI 119
Query: 611 LLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 510
LL + +L EPN + PA A ++ ++R +++K
Sbjct: 120 LLSVVSMLAEPNDESPANVSAAKMWREDRAQFEK 153
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 67.7 bits (158), Expect = 8e-12
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKD-----------WRPAITIKQI 612
F +YP SPP KF + HPNVY +G +C+S+L D W P +++ I
Sbjct: 65 FPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTI 124
Query: 611 LLGIQDLLNEPNVKDPAQAEAYTIY 537
LL + LLNEPN PA +A +Y
Sbjct: 125 LLSVISLLNEPNTSSPANVDASVMY 149
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 66.9 bits (156), Expect = 1e-11
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDE-----------EKDWRPAITIKQI 612
F DYP PPK KF + HPN+ G VC+S+L + E+ W P T++ I
Sbjct: 59 FPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETI 118
Query: 611 LLGIQDLLNEPNVKDPAQAEAYTIYCQNRLEYDK 510
LL + +L +PN + PA +A + +N E+ K
Sbjct: 119 LLSVISMLTDPNFESPANVDAAKMQRENYAEFKK 152
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 64.5 bits (150), Expect = 8e-11
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEP 579
F DYP PPK FE + HPNV G CL ++ E +W+PA +Q+++ + L+NEP
Sbjct: 57 FPVDYPFKPPKVAFETKIYHPNVDEEGKFCLPIVTAE-NWKPATKTEQVMMALLSLINEP 115
Query: 578 NVKDPAQAE 552
P +A+
Sbjct: 116 EPSHPIRAD 124
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = -3
Query: 749 DYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVK 570
+YP + PK +F + HPN+ G +CL +L ++ W PA+ I+ +LL IQ LL+ PN +
Sbjct: 62 EYPMAAPKVRFMTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPE 119
Query: 569 DPAQAEAYTIYCQNRLE 519
DP + + N E
Sbjct: 120 DPLATDVAEQWKTNEAE 136
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = -3
Query: 749 DYPSSPPKCKFEPPLXHPNVYP-SGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNV 573
+YP PP KF + HPNV P + +C +L +E +W+P T++ +LL + LLNEP++
Sbjct: 71 EYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQE-NWKPETTMEDVLLNLIVLLNEPDL 129
Query: 572 KDPAQAEAYTIYCQNRLEYDK 510
P +A Y N++E+ K
Sbjct: 130 SRPVNIDAAHDYIHNKVEFVK 150
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = -3
Query: 746 YPSSPPKCKFEPPLXHPNV-YPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVK 570
YP SPP KF + HPNV +G +CL +L ++ W ++T++ +LL IQ L+ P K
Sbjct: 66 YPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQ--WAASLTLRTVLLSIQALMCTPEPK 123
Query: 569 DPAQA 555
DP A
Sbjct: 124 DPQDA 128
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = -3
Query: 746 YPSSPPKCKFEPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKD 567
+P PP C+F+ PL HPNV G++ L +L++E W ++K++L I +LL P++
Sbjct: 97 WPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQE-HWSSETSLKKLLREISNLLATPDLTQ 155
Query: 566 PAQAEAYTIYCQNRLEYD 513
A EA+ Y R Y+
Sbjct: 156 AANIEAWMEYENQRENYE 173
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 746 YPSSPPKCKFEPPLXHPNVYP-SGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVK 570
YP P KF + HP+V P GT+CL +D W ++TI ++L+ IQ ++ N K
Sbjct: 408 YPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGV-WPVSMTIYKVLIVIQSWMSNFNEK 466
Query: 569 DPAQAEAYTIYCQNRLEYDK 510
+P E NR ++K
Sbjct: 467 EPIDVEILEQATNNREVFEK 486
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = -3
Query: 758 FXXDYPSSPPKCKF--EPPLXHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL- 588
F YP + P+ F E HP++Y +G +CLS+L + DW PA++++ + L I +L
Sbjct: 61 FGPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSD--DWTPALSVQSVCLSILSMLS 118
Query: 587 NEPNVKDPAQAEAYTIYC 534
+ K P Y C
Sbjct: 119 SSKEKKHPIDDAIYVRTC 136
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPP-----LXHPNVYPSGTVCLSLLD-----EEKDWRPAITIKQIL 609
F YP SPPKC F +PN+Y G +CLS+L E+ W P ++ Q+L
Sbjct: 468 FPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVL 527
Query: 608 LGIQDLLNE 582
+ IQ+++ +
Sbjct: 528 VSIQEVIEK 536
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = -3
Query: 749 DYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLD----EEKDWRPAITIKQILLGIQDLLNE 582
+Y + PP K + HPN+ G++CLS+L ++ WRP + ++ G+ L N+
Sbjct: 86 EYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFND 145
Query: 581 -PNVKDPAQAEAYTIYCQNRLEYD 513
+ D +A ++ QNR ++
Sbjct: 146 LMDFNDALNIQAAQMWSQNRESFN 169
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = -3
Query: 746 YPSSPPKCKFEPPLXHPNV-YPSGTVCLSLLDEEKDWRPAITIKQIL-LGIQDLLNEPNV 573
YP P F + HPN+ SGTVCL ++++ W + I + LL PN
Sbjct: 62 YPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQA--WTALYDLTNIFDTFLPQLLTYPNA 119
Query: 572 KDPAQAEAYTIYCQNRLEY 516
DP EA +Y EY
Sbjct: 120 ADPLNGEAARLYIHKPEEY 138
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 758 FXXDYPSSPPKCKFEPPLXHPNVYPSGTVCLSLLD-EEKDWRPAITIKQILLGIQDLLNE 582
F ++P SPP P + + +CLS+ D + W P T+ IL+G+ +NE
Sbjct: 74 FKENFPWSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNE 131
>AC006675-1|AAK84559.1| 334|Caenorhabditis elegans Serpentine
receptor, class h protein33 protein.
Length = 334
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 371 SVVLLF*SPVFTFILLFRQWLSSLTLHCPILIF 469
S ++LF S +F + ++RQ+LS L + C ++I+
Sbjct: 110 SALILFTSRIFMIMNMYRQYLSHLRIFCELMIY 142
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 686 PSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNEPNVKDPAQAEAYTI 540
P+ VC S KDW+P T+ + Q +L N DP AY I
Sbjct: 852 PATKVCRSFT--LKDWKPGNTVLTLSANHQYILISGNQSDPGVIYAYHI 898
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,744
Number of Sequences: 27780
Number of extensions: 321397
Number of successful extensions: 742
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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