Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12h01r
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 470  TQQQPLHVPALLLACHTL 523
            TQQQP+ +P+ LL   TL
Sbjct: 1236 TQQQPIILPSQLLNIKTL 1253


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 215 NVSYFNSGKF*SHYEFIILWLTC 147
           NV+Y   GK+        LWLTC
Sbjct: 93  NVAYLLLGKWIFGIHLCKLWLTC 115


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 215 NVSYFNSGKF*SHYEFIILWLTC 147
           NV+Y   GK+        LWLTC
Sbjct: 93  NVAYLLLGKWIFGIHLCKLWLTC 115


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 215 NVSYFNSGKF*SHYEFIILWLTC 147
           NV+Y   GK+        LWLTC
Sbjct: 93  NVAYLLLGKWIFGIHLCKLWLTC 115


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 325 FQKYLIHTVRSDGLNYRFK 269
           FQKY+  T+ S+  N+R +
Sbjct: 381 FQKYMSGTLNSNETNFRIQ 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,945
Number of Sequences: 438
Number of extensions: 4027
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)