Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g22f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   2.5  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    27   2.5  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   4.4  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    26   4.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.9  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 315 IEHHVRQGFVPFDKRC 268
           I HHVR+ + PF+ RC
Sbjct: 299 IYHHVRRAYNPFEDRC 314


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 73  YCDVDFSERPRNFSIELLYHTQTQTDGHVVISPFGIWTLMTGIALGASGNSYRQLSRAFI 252
           Y  + F+E   N +      TQT  D     +PFG++ L+ G+    S    R +  AF 
Sbjct: 248 YHGMVFTETFGNLAYAFACRTQTLRDVGGNANPFGVFLLLQGLET-LSLRMERHVQNAFA 306

Query: 253 LPK 261
           L K
Sbjct: 307 LAK 309


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 532 GSRQSAERSRRVPRIFRCRCWLFE 461
           GS    E    +  +FRCRC +F+
Sbjct: 71  GSNDDEEDDLDITTLFRCRCMIFD 94


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 536 SWKSSERRTFETRPP 492
           +WK  + +TFET+PP
Sbjct: 357 NWKDVKSKTFETKPP 371


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 258 GQNKRSAQLPIAITGRS*SDSRHQSPYPKRRDHNVPISLS 139
           G NK   + P  ++  + S S H+S  P+RR+ +  +S+S
Sbjct: 121 GMNKSVHEYPFTLSESAISSS-HKSSIPERRNFDSSVSVS 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,980
Number of Sequences: 5004
Number of extensions: 49019
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)