Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g22f
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0619 + 26652923-26653267,26653440-26654273                       37   0.013
02_04_0572 + 23972319-23973683                                         32   0.28 
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420...    31   0.85 
03_05_0294 + 22855503-22855946,22856346-22856399                       30   1.5  
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047...    29   2.6  
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310...    29   2.6  
02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077     28   4.5  
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    28   6.0  
06_03_0682 + 23487507-23487686                                         28   6.0  
02_02_0422 + 10053666-10053684,10054178-10054426,10054552-10055045     27   7.9  

>04_04_0619 + 26652923-26653267,26653440-26654273
          Length = 392

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
 Frame = +1

Query: 160 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 339
           + SP G+   +  +A G  G + RQL  AF+  ++    I    + +  +L +      L
Sbjct: 23  MFSPLGLRAGLALLATGTDGETLRQLL-AFLGSQH----IHQLNAASAGLLAEMRAWPQL 77

Query: 340 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYI-EKSGGRVSN 510
                +F+D    L P F++T     GA  + +DF +  +A  A  N +I + + GR++N
Sbjct: 78  SFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137

Query: 511 VLRSDDFQES-RLILTNVI 564
            +    F  S + +L N +
Sbjct: 138 TISPGTFGSSTKCVLANAM 156


>02_04_0572 + 23972319-23973683
          Length = 454

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 344 AGTLSSWTTISPYCR----PSGRRSRRISVLRL 430
           AG LSSW   +P+CR      GRR  R++ L L
Sbjct: 47  AGVLSSWNKTTPFCRWNGVKCGRREHRVTALEL 79


>11_01_0532 +
           4201374-4201401,4201475-4202652,4204316-4204670,
           4204791-4204864,4206965-4207056,4207500-4207573,
           4207680-4207822,4207889-4207909
          Length = 654

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 204 SDSRHQSPYPKRRDHNVPISLSL 136
           SDSR Q P+P  RDHN  +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606


>03_05_0294 + 22855503-22855946,22856346-22856399
          Length = 165

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
 Frame = +1

Query: 154 HVVISPFGIWTLMTGIALGASGNSYRQLSRAFILP-KNPATLIEGY-KSLTDVVLDQT-- 321
           +V  SP  +   ++ +A GA G +  QL     +P +  A  +  + + +  +VL  +  
Sbjct: 45  NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104

Query: 322 ANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF 444
           A G  +   + VF+D+  +L+ +F+      + A    +DF
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145


>08_01_1061 -
           10804269-10804352,10804464-10804593,10804696-10804745,
           10805154-10805216,10806235-10806375,10806541-10806925,
           10807735-10808339
          Length = 485

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 431 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 276
           ++E   S  SV +  G+ +K + ++TKFRL + D P+   S   SV   +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370


>03_06_0135 +
           31928838-31929698,31929783-31929932,31930795-31931065,
           31931157-31931249,31931442-31931616,31931715-31931960,
           31932100-31932294,31932604-31932802
          Length = 729

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 261 KSGNAYRRVQIPDGRGARSDRERSIPGQPELCLL 362
           KSG+ Y      DG G++  RERS P  P  CL+
Sbjct: 236 KSGHHYIPCVDFDGDGSQRHRERSCPRLPATCLV 269


>02_03_0010 - 13914705-13915318,13915536-13915860,13915907-13916077
          Length = 369

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +3

Query: 237 EQSVYFAQKSGNAYR----RVQI---PDGRGARSDRERSIPGQPE 350
           E+++Y   K+ N YR    RV+    P  +G  ++  R IPGQPE
Sbjct: 135 EEAIYMGNKNNNGYRLSGGRVRNQPRPYYQGVPANEFRRIPGQPE 179


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 407 WSVVLKAGNKVKSLSKKTKFRLTRD 333
           W  ++  GN+V S+ K  KFR  RD
Sbjct: 57  WIGIICTGNRVTSMLKTVKFRTVRD 81


>06_03_0682 + 23487507-23487686
          Length = 59

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 211 ASGNSYRQLSRAFILPKN-PATLIEGYKSLTDVVLDQTANGVSLV 342
           A+G     L++   LP   P+T IE YK   +V L    +GV+++
Sbjct: 13  AAGGMRHDLTQTVALPCAWPSTTIEAYKKTPNVELQDQVSGVNML 57


>02_02_0422 + 10053666-10053684,10054178-10054426,10054552-10055045
          Length = 253

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 255 AQKSGNAYRRVQIPDGRGARSDRERSIPGQPELCLLGQRFH 377
           A K G   + V  P+GRG    R+   PG+  + + G+  H
Sbjct: 39  ASKGGERLQYVSPPNGRGRPHRRDGGAPGKDFIFINGEYVH 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,421
Number of Sequences: 37544
Number of extensions: 333952
Number of successful extensions: 896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)