Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g22f
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.53 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.53 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.70 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 311 STTSVRDLYPSISVAGFLGKINALLSCL 228
           ++TS    +P+I + G+ G+   ++SC+
Sbjct: 76  NSTSENKTFPTIKIVGYKGRALVVVSCV 103


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 311 STTSVRDLYPSISVAGFLGKINALLSCL 228
           ++TS    +P+I + G+ G+   ++SC+
Sbjct: 76  NSTSENKTFPTIKIVGYKGRALVVVSCV 103


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 181 WTLMTGIALGASG 219
           WTLM  IAL ASG
Sbjct: 4   WTLMAAIALAASG 16


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 7   RAGREQCRMYSIAFVLFFVGACYCDVDFSERPRN 108
           RA R     + IA +     A Y D+++ E P+N
Sbjct: 149 RAIRSIFGAWLIALIFAMPFATYVDINYVEYPQN 182


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 212 APKAIPVIKVHIPNGEITTCPSV*VCVWYKSSMLKFLGLSLK 87
           A  ++PV+ V    G I   PSV + +W +  +   L L  K
Sbjct: 2   AGNSVPVLLVTANVGSIFEEPSVMLKIWTEEFLSTILRLDPK 43


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -2

Query: 534 LEVVRAQNVRDASPGFFDVGVGYSSRIRVAEVEHFNRSTEILLERRPEGRQ*GEIVVQED 355
           +E + ++  +  SPG  D     ++   V   +    S +I L R PEG Q     +Q+ 
Sbjct: 72  IEKLGSERSKSRSPGSRDRSNTSNTSKTVILSDKLESSDDISLFRGPEGIQINATELQKI 131

Query: 354 KV 349
           K+
Sbjct: 132 KL 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,374
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)