Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g20f
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    30   0.22 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   0.91 
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   1.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   3.7  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   3.7  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.8  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   4.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   6.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   6.4  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   8.5  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   8.5  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.5  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 108 NMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNT 287
           +++V A DS  S           D+D   K  +  + EP G   + N    L  NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338

Query: 288 INFSYKLWT 314
                K +T
Sbjct: 339 RRAMMKSYT 347


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 420 MTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 572
           M LS D D  GD +A+G   +H   W+ +S++ S +   + ++P   ++LK
Sbjct: 258 MCLSGDFDHYGDVEAFG---NHPPWWRQLSNFASVQDRLRDWDPIVAKKLK 305


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 351 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 455
           LE+ L+L  +   K+IN HD ++ TL   L    D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 396 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQ 563
           I++ DD Y  +   L++  D DAY   +   ++ +F+S  ESN      F   YN+
Sbjct: 54  IHEQDDSYSDI---LEEEPDEDAYDSPERPSSTEEFISQDESNISAGSSFMFPYNR 106


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 195 KRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 374
           K  E+L +  +   ++ N+V   LN+      NF Y +W+    N  QS   L + L  D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858

Query: 375 DK 380
           +K
Sbjct: 859 EK 860


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 354 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 494
           E   + D++ D + +   D+  +  S D+ ++GD     DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +3

Query: 60  KLKILTTLSVIIATFFNMSVEA----SDSGKSDRKLYNSVITADYDDATKRCEQLQSEPD 227
           ++ ++TT S++  T      +A    SDS   +  + +++    YD+     + +    D
Sbjct: 323 EVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMAYDEENPYVDVVPKAMD 382

Query: 228 GSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCF 347
            S      V   +N A+ +T+N +Y + +T   N V   F
Sbjct: 383 ESENPDFGVDTEVNMADGSTMNENYSIISTAAANGVYEYF 422


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 435 DLDQNGDRDAYGDEDDHKNSWKFMSSWESN 524
           D+ +  D DAYG+E+     W    S +SN
Sbjct: 254 DISEILDLDAYGNENTSNLEWSIQRSNDSN 283


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 157 TIQ*LPLTTMMQPKDASNFNPNRMVR 234
           T++  PL+ M + KD+S F  NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 180 YDDATKRCEQLQSEP--DGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQS 341
           Y++   RC+ +   P  D S+++  T T+ +NN + N      K +T G Q+++ S
Sbjct: 525 YENHKNRCDPINYVPMNDASHVM--TCTKAMNNFKRNATFMRTKSYTFG-QSVLAS 577


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 186 DATKRCEQLQSEPDGSYIIKNTVTEL 263
           +ATKRC+QL  E D   I++N V +L
Sbjct: 439 EATKRCDQLNREID---ILQNHVEKL 461


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 331 IFWCPVVHSL*EKLIVLDSALLSSSVTVFFMMYEPSGS 218
           IFW  +     +K I +D+ +L+   T     +EP G+
Sbjct: 324 IFWTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKGA 361


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 435 DLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 572
           D DQ GD +A+G   D +     +S + S +   + + P  +++LK
Sbjct: 247 DFDQYGDTEAFGTHPDWERQ---LSKFASVQDRLREWRPSVSEKLK 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,137
Number of Sequences: 5004
Number of extensions: 48438
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)