Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12g20f
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92786-6|CAB07208.1| 569|Caenorhabditis elegans Hypothetical pr... 33 0.21
AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical ... 29 2.5
Z81592-4|CAB04728.1| 436|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL132848-3|CAB60386.1| 327|Caenorhabditis elegans Hypothetical ... 29 3.3
Z99942-9|CAB17073.3| 675|Caenorhabditis elegans Hypothetical pr... 27 7.7
U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical pr... 27 7.7
AY652945-1|AAT73712.1| 675|Caenorhabditis elegans guanylate cyc... 27 7.7
AL008867-4|CAD56232.2| 675|Caenorhabditis elegans Hypothetical ... 27 7.7
AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z92786-6|CAB07208.1| 569|Caenorhabditis elegans Hypothetical
protein F47H4.9 protein.
Length = 569
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 94 LRHFSICRLKQVILANPTENYTIQ*LPLTTMMQPKDASNFNPNR 225
LR+F L++++L +PT+N I+ L M Q K+A NF +R
Sbjct: 431 LRNFKSGILQEIVLGSPTDNADIE--KLVDMRQWKEAKNFESSR 472
>AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical
protein Y53G8AR.5 protein.
Length = 287
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 191 CIIVVSGNY*IV*FSVGFARITCFNRHIEKCRNYNRQSC*NLQFHLEFSLRFELLHP 21
C+I ++ + IV F CFNR++ +C RQ + Q H++ + + P
Sbjct: 122 CLICLASSPIIVTACDHFMHFACFNRYLTECLTGLRQEIQDAQKHMKEQVETNIFCP 178
>Z81592-4|CAB04728.1| 436|Caenorhabditis elegans Hypothetical
protein T16G1.4 protein.
Length = 436
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 411 DLYMTLSKDLDQNGDRDAY-GDEDD---HKNSWKFMSSWESNRVYFKIFNPKYNQRLKMG 578
++Y T DLD+ + ++Y G E D H + W WE N F + Q + MG
Sbjct: 248 EIYGTELVDLDKAINLNSYIGIERDVLVHGDLWSANILWEENEGKFLVSKVIDYQLIHMG 307
Query: 579 DPVKD 593
+P +D
Sbjct: 308 NPAED 312
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -1
Query: 534 NKLCSIPTRT*TSNCSYGRPRRHMRLYHHFGLDPCSESCTDRHAC 400
+KLC++ ++ C++ ++ + + PC+E CTD+ C
Sbjct: 1836 SKLCALCVNNCSNKCAHRSCT--LKCFEECNVKPCTEPCTDKLKC 1878
>AL132848-3|CAB60386.1| 327|Caenorhabditis elegans Hypothetical
protein Y47H10A.4 protein.
Length = 327
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 102 FFNMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSE 221
FFN+++E DSG+ + N V DY TK E Q +
Sbjct: 41 FFNLNIEVPDSGQGEN---NMVSFLDYISQTKCLEDAQPD 77
>Z99942-9|CAB17073.3| 675|Caenorhabditis elegans Hypothetical
protein C46E1.2 protein.
Length = 675
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 297 SYKLWTTGHQNIVQSCFPLEFRLILDDKKDCKIINKHDDLYMTLSKDL 440
+YK+ T H + + S FP + +++D +DCKI+ +LY + KDL
Sbjct: 214 NYKIRLT-HMDFI-STFP--YHMVVD--QDCKIVQVGRELYNHIPKDL 255
>U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical
protein W03B1.8 protein.
Length = 705
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 159 NSVIT-ADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNA 275
N+VI DY+ A KR +QL + +G ++ + + E NN+
Sbjct: 607 NTVIKLGDYEMARKRYDQLVKDCNGKCVLVDYLPEFYNNS 646
>AY652945-1|AAT73712.1| 675|Caenorhabditis elegans guanylate
cyclase-like protein protein.
Length = 675
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 297 SYKLWTTGHQNIVQSCFPLEFRLILDDKKDCKIINKHDDLYMTLSKDL 440
+YK+ T H + + S FP + +++D +DCKI+ +LY + KDL
Sbjct: 214 NYKIRLT-HMDFI-STFP--YHMVVD--QDCKIVQVGRELYNHIPKDL 255
>AL008867-4|CAD56232.2| 675|Caenorhabditis elegans Hypothetical
protein C46E1.2 protein.
Length = 675
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 297 SYKLWTTGHQNIVQSCFPLEFRLILDDKKDCKIINKHDDLYMTLSKDL 440
+YK+ T H + + S FP + +++D +DCKI+ +LY + KDL
Sbjct: 214 NYKIRLT-HMDFI-STFP--YHMVVD--QDCKIVQVGRELYNHIPKDL 255
>AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical
protein C35E7.9 protein.
Length = 301
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 372 DDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNP 551
+DKKD K +K ++ +D + GD ++DD K+ K E + K
Sbjct: 108 EDKKDDKKDDKKEEKKEEKKEDEKEKGDDKKEDEKDDKKSGSKDAEKKEEKKEEEKKEEK 167
Query: 552 KYNQR-LKMGDPVKDDE 599
K ++ K D K+DE
Sbjct: 168 KEEKKEEKKEDEKKEDE 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,309,334
Number of Sequences: 27780
Number of extensions: 278465
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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