Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g20f
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   0.99 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.99 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.99 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.2  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 426 LSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNR 527
           ++ DL + G  DA+    D       + SWE NR
Sbjct: 193 IAVDLGKGGCNDAFAYMSDELGYGLIVYSWEQNR 226


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 302 VREINCVRFGIVKQLGNCVLYDVRTIRFGLKLLASFGCIIVVSGNY 165
           V  +NC+R   +  L  C+L   +T      LLAS     ++S  Y
Sbjct: 421 VNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAY 466


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 302 VREINCVRFGIVKQLGNCVLYDVRTIRFGLKLLASFGCIIVVSGNY 165
           V  +NC+R   +  L  C+L   +T      LLAS     ++S  Y
Sbjct: 459 VNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLASDALKQILSAAY 504


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 11  VDVVDARAQNVS*ILNEIEDFNN 79
           VDV++A  + +  I NE+ED +N
Sbjct: 419 VDVINAAKELIFQIANELEDASN 441


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 456 RDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPK 554
           RD + +++   N   F+ SW+       I  PK
Sbjct: 12  RDVFIEKEQMMNILMFLPSWDGKMPQPCILKPK 44


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 56  NEIEDFNNSVGYNCDI 103
           N +ED   ++ Y+CD+
Sbjct: 119 NLLEDIYETLSYDCDV 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,038
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)