Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12g18r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    32   0.10 
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    31   0.23 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.2  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   3.8  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   3.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   5.0  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   5.0  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    26   5.0  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   6.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   6.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   6.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.7  

>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
 Frame = -2

Query: 442 KLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRV--YFKIMSTEDKQYLKLDNTKGS 269
           K ID+     I +G  K       S+ F P  E +R+    K++  ED     LD  K  
Sbjct: 219 KDIDENEEVTINYGSEKGSAEFLFSYGFLPEPEGDRITNVMKLLIPEDSND-SLDLAKRR 277

Query: 268 SDDRIXYGDSTADTFKHHWYLEPSMYESDVMFFVYNRE--YNSVMTLDEDMAANEDREAL 95
           S       +  +D+    W+  P ++     F V N E   N  M  DE  A   D E  
Sbjct: 278 SCKTPPMIEFVSDSSGELWWHAPFLF-----FSVLNVEDFTNFKMVCDESKAQTVDWEFE 332

Query: 94  GHSGEVSGYPQL 59
           G    V   P+L
Sbjct: 333 GQKCSVEDLPKL 344


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 293 QVLFVFGGHDLEVYSVVFQHGGK 361
           +V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 402 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT-VSXTVIAPLTP 226
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T  S T + P  P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360

Query: 225 SNTTGT 208
             +T +
Sbjct: 361 PTSTSS 366



 Score = 29.1 bits (62), Expect = 0.71
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 402 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT-VSXTVIAPLTP 226
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T  S T + P  P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414

Query: 225 SNTTGT 208
             ++ T
Sbjct: 415 PTSSST 420



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 396 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSXTVIAPLTPSN 220
           P T  +     S P P   T+  TS S PP  NST + +T  V   + S T   P  P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPAS 321

Query: 219 TTGT 208
           T+ T
Sbjct: 322 TSST 325



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 402 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSXTVIAPLTP 226
           +TP   P   S  S+P P   T+   + S P  T ST S  T   +    S ++  P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249

Query: 225 S 223
           +
Sbjct: 250 T 250



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -3

Query: 411 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVLVMTVSXTVIAP 235
           L++ TP T P   S  S    W  TT  T  S    T+ST   +T      T   +  + 
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657

Query: 234 LTPSNTTGT 208
            T S++T T
Sbjct: 658 STSSSSTAT 666


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 273 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 422
           PF+L++ R C    D  +KY L+ +     F  + L+V +L    A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 695 VVIGEYETAIAKCSEYLKEKKG-RGYQGSREASDR 594
           ++   +E    K SEY KEK G R Y   R  SDR
Sbjct: 469 IIDTNFEDGTHKISEYTKEKLGTRVYNRKRIVSDR 503


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -2

Query: 643 RKRRGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 533
           ++R+  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 139 KRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 320 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 421
           DLE   +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -2

Query: 268 SDDRIXYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 134
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V+ L
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 82  LRCAPRLHGLRWRPYLHQXS 141
           L  A +LHG+RW  Y H+ S
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 188 FVHGGLKVPVVFEGVSGAITVXDTVIT 268
           F H  +    V  G+ GAIT+ D++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 472 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 380
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 25/92 (27%), Positives = 41/92 (44%)
 Frame = +2

Query: 263  ITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQL 442
            + + +R+     +   GG   E YS + Q   KL           +   N  VVLL D +
Sbjct: 1237 VLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLLQD-I 1290

Query: 443  EGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 538
             G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1291 HGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = -2

Query: 490 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 311
           +  T K +N+++H+ L L     ++   FG S D +S ++    +   +N   YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201

Query: 310 EDKQYLK 290
           +   ++K
Sbjct: 202 DGFDFIK 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,192
Number of Sequences: 5004
Number of extensions: 66256
Number of successful extensions: 255
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)